Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a20
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    28   6.4  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -1

Query: 338 EFFCHVSFSKF*FFNGSPVKLQKSRLNQISFRPSLSQPATYFVCQNLYCLD 186
           +FF H    KF     +P   + +  N +   PS++  + YF    +Y +D
Sbjct: 394 QFFGHTHSEKFYMMYANPDDYKSTPTNVVYSAPSVTPYSDYFPAYRIYTID 444


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 525 YPTLQTETHYCFTAEIGGAVVPTRADSXEVLPPVITQIIILRV*FLIHNVI 677
           +P      ++ ++  +GG    T A+S EVL  ++T +I+  +     N++
Sbjct: 148 WPIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIVFTLFTATANIV 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,344
Number of Sequences: 27780
Number of extensions: 342606
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)