Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a16
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    29   0.53 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   4.9  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   4.9  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   6.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.6  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   8.6  

>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -3

Query: 341 GELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFIREELRQAKM 192
           G+L+ D+   F  QL  I+  + +  +   HRDL+ E + + ++ RQ K+
Sbjct: 145 GKLDEDLARSFAMQL--INALVYLHKNFIVHRDLKIENVLLTQDSRQVKL 192


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 362 PEKMEEAGELEADVGARFDQQLAS 291
           P K E  G+L ++ GARF Q L S
Sbjct: 170 PLKTELYGQLNSECGARFPQTLKS 193


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 398 LKMSNAPDDENEPEKMEEAGELEADVGARFDQQ 300
           L+ S++P+ +N+P  MEE       +  R  QQ
Sbjct: 13  LRESSSPNSQNKPNAMEEIKRRRLQLEQRLAQQ 45


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 20  VHNKKTVFFNYQILIQFICFKDQVERRLN 106
           VH  +++FF+ QI+   IC+     RR++
Sbjct: 274 VHTDRSLFFSGQIIDFTICYTHNHHRRIH 302


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 394  KCRTHQMMKMNPKKWKKQGNWKLMLALDLTNNS 296
            +C++H+M+ +NP   +  G +   ++  LTNN+
Sbjct: 1422 ECKSHEMLTINPPSGQTCGEY---MSAFLTNNT 1451


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -3

Query: 380 PDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFI----RE 213
           PD++ E ++  +  + E  +  + +Q++++     KID D     D     MF+     E
Sbjct: 394 PDEDEESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEE 453

Query: 212 ELRQ 201
           E+RQ
Sbjct: 454 EVRQ 457


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 155 VSSMQPDERPKFAFSPDVTPLV*TSFPVASLDAQTDPCRFSDEDLYSRVV 304
           +S  +P ++ K A  P    +   + PV       DP  F D+D + +VV
Sbjct: 304 ISDYRPPKKRKRAAWPPYKKVDRVNVPVVHDTTAFDPSTFDDDDGHYKVV 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,040
Number of Sequences: 5004
Number of extensions: 35991
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)