Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a16
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 31 0.63
AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical... 29 1.5
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 28 4.5
U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 28 4.5
Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF016682-3|AAB66186.2| 308|Caenorhabditis elegans Hypothetical ... 27 5.9
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 30.7 bits (66), Expect = 0.63
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 407 KWLLKMSNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEM 228
K + ++ N + E + A +L+ ++ A LAS+DPRL D P RP+
Sbjct: 205 KEMEELENDKGEAVADEDFQRANDLQDEITALRSNILASVDPRLLEDTMPRNEEIHRPKN 264
Query: 227 MF 222
+F
Sbjct: 265 LF 266
>AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical
protein Y47G6A.3 protein.
Length = 181
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 314 RFDQQLASIDPRLKIDMDPFAHRDLRPEM 228
R+D +L I +LKI +D A RDL P++
Sbjct: 48 RYDLRLRQIAEKLKIAVDEMAGRDLHPKL 76
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 389 SNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 261
S DD+N+PE+ + + +V A DQ+ A K D D
Sbjct: 1160 SEIKDDQNQPEEFSAEHQGKFEVSAEPDQESAEFQLEAKKDQD 1202
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 389 SNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 261
S DD+N+PE+ + + +V A DQ+ A K D D
Sbjct: 1160 SEIKDDQNQPEEFSAEHQGKFEVSAEPDQESAEFQLEAKKDQD 1202
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 389 SNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 261
S DD+N+PE+ + + +V A DQ+ A K D D
Sbjct: 1160 SEIKDDQNQPEEFSAEHQGKFEVSAEPDQESAEFQLEAKKDQD 1202
>Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical
protein F11A6.1b protein.
Length = 760
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 291 YRSSSENRHGSVCASRLAT--GNDVYTRGVTSGENANFG 181
Y S ENRHG+ CA +A N + G+ NAN G
Sbjct: 254 YEFSDENRHGTRCAGEVAAIFNNSLCIVGI--AYNANIG 290
>Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical
protein F11A6.1a protein.
Length = 692
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 291 YRSSSENRHGSVCASRLAT--GNDVYTRGVTSGENANFG 181
Y S ENRHG+ CA +A N + G+ NAN G
Sbjct: 254 YEFSDENRHGTRCAGEVAAIFNNSLCIVGI--AYNANIG 290
>U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein
protein.
Length = 692
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 291 YRSSSENRHGSVCASRLAT--GNDVYTRGVTSGENANFG 181
Y S ENRHG+ CA +A N + G+ NAN G
Sbjct: 254 YEFSDENRHGTRCAGEVAAIFNNSLCIVGI--AYNANIG 290
>Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical
protein T01H3.4 protein.
Length = 486
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 329 LPIPLLLPFFRVHFHHLVRSTFSTATSTRPMKIYLPNFDYE 451
LP P L F+ FHH TF AT + M Y PNF+++
Sbjct: 412 LPSPAFLYFY---FHHW---TFFNATKSLLMLGYKPNFEFK 446
>AF016682-3|AAB66186.2| 308|Caenorhabditis elegans Hypothetical
protein T07D3.6 protein.
Length = 308
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 29 KKTVFFNYQILIQF---ICFKDQVERRLNRYSSIHSLLP*N 142
KKT+FF + +LI F ICF+ +++ YS +LLP N
Sbjct: 40 KKTLFFLFLVLILFLLHICFQKSRKQKFT-YSQNVTLLPNN 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,603,939
Number of Sequences: 27780
Number of extensions: 204980
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -