Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a13
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 31 0.19
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 30 0.33
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.0
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 28 1.3
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 28 1.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 7.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 7.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 7.2
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 7.2
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 7.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 7.2
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 25 9.5
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 31.1 bits (67), Expect = 0.19
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = -1
Query: 532 TLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSDKVRSYA-VQTLCNLFKNRPQP 356
T+ A L LA G T++ +N L+ L ++ R YA V L L KN
Sbjct: 101 TVLAAKALGRLAVPGGALTSEFVNFEVKRALEWLQGERNENRRYAAVLILKELAKNT--- 157
Query: 355 YDTTVYGAHVDALYSAMLVHLDDVDETFRNEMLDALLQLSDI 230
T +Y AH+D+++ + L D T R DAL + I
Sbjct: 158 -STLIY-AHIDSIFELLWHGLRDPKVTIRIASADALSEFLKI 197
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 709 LQDSPQDERIRAENGGDGDTVDKEVNLFPTKESLEPFLD 593
L D Q + +R ++ GD + DKE ++ P S +P+ D
Sbjct: 114 LYDKTQKQLLRRDSSGDLTSTDKERDVSPVSHSEKPYWD 152
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 607 EPFLDEMVPLLMGLVEDNSTLTRQHTLRAV 518
EP+L +++PLL+ DN+ R+ T+ AV
Sbjct: 1438 EPYLPDLLPLLLTSFGDNANEVREATMDAV 1467
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -1
Query: 610 LEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRL 431
LEP+LD+++ L+ L++ ++ + + +A A ++ D + + F VL++
Sbjct: 490 LEPYLDDILQRLLTLLQSPKRYVQEQAVTTIATVADAAAKKFEKYFDAIMPLLFNVLQQA 549
Query: 430 D 428
D
Sbjct: 550 D 550
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -1
Query: 703 DSPQDERIRAENGGDGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVEDNSTLTRQHTLR 524
D+P +ERI+A + G + +++ L T +SLE ++ + V NS LTR R
Sbjct: 43 DNPIEERIKACDAGIQTSEEQKKELEHTMQSLEMIINVLEKANEKPVITNSPLTRSRRNR 102
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.8
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = -1
Query: 514 CLATLARQRGCFTADILNKMYFVVLKRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTT--- 344
C+ + F + LN +F L+ V +K+ S+ + L + K P+ DT+
Sbjct: 89 CIVKYHQSLDDFKSLCLNIFHFDP-NTLEIVMEKIYSWDIFRLQEVLKTVPK-IDTSSAS 146
Query: 343 --VYGAHVDALYSAMLVHLDDVDETFRNEMLDA-LLQLS 236
+ A + LYS ++H ++ FRN L++ L+LS
Sbjct: 147 KPILCAFYEILYSPRILHNKEIFPLFRNRFLESGFLRLS 185
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 677 PDALVLRAVLQRGAQTRDGRGAYRLSGATRRPY 775
PDA ++Q G++ R+G G Y L GA PY
Sbjct: 1500 PDAAAFSPLVQGGSEGREGFGDYGLLGAA-SPY 1531
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 445 VLKRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVHLDD 287
VLKRL D S + + V L N+F P+ + H D + + L+ + D
Sbjct: 253 VLKRLQDCSINIDTSTVDKLKNVFHPNIVPFHSAF---HTDTFHDSSLLLIYD 302
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 559 DNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSDKVRSYAVQTLCN 380
D + R+ R + L L+ G D L+ + ++ + VSD R AV+TL
Sbjct: 313 DAYQIEREQAFRLIRTLYFLSSTEG--HEDYLSGITRTIISICEHVSDVSRGIAVETLIE 370
Query: 379 LFKNRPQ 359
L RP+
Sbjct: 371 LMIIRPK 377
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = +1
Query: 649 RCRHLHRSRPGCARPEGCPAARSTDTRRPRCVS 747
RC +S+ GC R C R C+S
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCRDAGLNSEDCIS 373
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 438 FNTTKYILFNISAVKQPRWRAKVARQHTARRVCCLVNVELSSTRPMRSGTISSKNGSKD 614
+N I+ N +++ + +R+ R +T + + V RP+RS T+ K+G+ D
Sbjct: 822 YNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYD 880
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 439 KRLDDVSDKVRSYAVQTLCNLFKNRPQPY 353
+RLDD V + AV +C L + P+ Y
Sbjct: 179 ERLDDPDTSVVNAAVSVICELARRAPKNY 207
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 682 CARPEGCPAARSTDTRRPRC 741
C E CP + S +T RP C
Sbjct: 55 CTAGENCPFSHSLETERPIC 74
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 636 TSLSTVSPSPPFSARMRS-S*GLSCSAEHRHATAAVRIASAVRP 764
TS S P P+ +S G++ SA H HATA + ++P
Sbjct: 35 TSRSFYCPLSPYMDSPQSIGYGVTISAPHMHATALQELEPVLQP 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,799
Number of Sequences: 5004
Number of extensions: 62678
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -