Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a13
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0269 - 21947847-21947904,21947988-21948169,21948268-219489... 34 0.11
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158... 33 0.26
05_07_0001 + 26976510-26977382 33 0.35
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 30 1.9
03_01_0320 - 2510907-2512190 30 2.5
02_05_0442 - 29044736-29046604 30 2.5
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 29 3.3
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522 29 4.3
09_06_0027 + 20318187-20318301,20318428-20318489,20318583-203186... 29 5.7
03_06_0485 + 34242121-34243188 29 5.7
03_06_0318 + 33103467-33104232,33104332-33105548 28 7.5
02_05_0372 + 28370589-28371857 28 7.5
10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681 28 9.9
>09_06_0269 -
21947847-21947904,21947988-21948169,21948268-21948963,
21949378-21950021,21950441-21950543,21950618-21950812,
21951308-21951931
Length = 833
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 661 DGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCC--LATLARQR 488
D DT ++ L +++ + +MV + V D ++ +R C + TLAR
Sbjct: 29 DRDTY--QIGLDELEKAADTLPPDMVGPFLSCVVDTDA-EQKSAVRKECIKVIGTLARSH 85
Query: 487 GCFTADILNKMYFVVLKRLDDVSDKVRSYAVQT 389
G A + KM ++KRL D VR V T
Sbjct: 86 GSLVAPHMTKMVTSIVKRLKDADSVVRDACVDT 118
>08_02_1364 -
26415278-26415319,26415399-26415518,26415739-26415825,
26416273-26416443,26416535-26416738
Length = 207
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 754 AEAIRTAAVACLCSALQDSPQDERIRA---ENGGDGDTVDKEVNLFPTKESLEPFLDEM 587
A A R C + QD+ + A +NGG V+KE+ L TK++L+ L++M
Sbjct: 126 ASASRPETTECPSNQNQDTTEQPAAGATEIQNGGKSSVVEKELKLQLTKDTLDKMLEDM 184
>05_07_0001 + 26976510-26977382
Length = 290
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 738 PRPSRVCAPRCRTALRTSASGPRTVEMATPSIRK*TFFPQKNPWNRF 598
PRP R PR + L S GPR + ++R TFFP + NRF
Sbjct: 4 PRPCRFGRPRWPSILGLSPFGPRPIS----AVRSETFFPGTSDRNRF 46
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -1
Query: 715 SALQDSPQDERIRAENGGDGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVEDNST 548
SAL+ SP R++++ GG D V E+ P++E+ P D +L+ + D++T
Sbjct: 22 SALRRSPPRVRVQSDEGGSSDGVLVEL---PSQEARSPGADPDGGVLVNMPADDAT 74
>03_01_0320 - 2510907-2512190
Length = 427
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 595 PKTVPRIL-LWEKGLLPYRRCRHLHRSRPGCARPEGCPAARSTDTRRPRCVS 747
P P++ W+ G CR LH P A P RS P CV+
Sbjct: 28 PPAPPKVCHYWKSGRCSRNPCRFLHTDAPDPAPPIAAVNTRSNTWVNPSCVA 79
>02_05_0442 - 29044736-29046604
Length = 622
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 599 FGRNGAAPHGSGGGQLDVDETAHSACRVLPRDFSP 495
FG AP G +LD D C V RDF P
Sbjct: 508 FGVGDPAPKIGGVAKLDFDRAGEGDCTVAQRDFGP 542
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -1
Query: 421 SDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHV-DALYS-AMLVHLDDVDETFRNEMLDAL 248
SD + YA+ TL N KN+ +T G+ + + +++ +L+HL D + D
Sbjct: 55 SDAIAIYALATLFNRHKNQDSTSSSTAQGSRILEVVWAPILLIHLGGQDSITAYNIEDNE 114
Query: 247 LQLSDIDPRTLMKKVKSNIHVY 182
L ++ T++ +V +I+V+
Sbjct: 115 LWKRNV--VTMVSQVTVSIYVF 134
>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
Length = 252
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 748 AIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDKEVNLFPTKE 614
A R+A+V C CS +P + AE G+G+ +K+ + P +E
Sbjct: 41 AARSASVLCYCSDATVAPAPQAAAAE--GEGEEGEKKAEVPPVEE 83
>09_06_0027 +
20318187-20318301,20318428-20318489,20318583-20318661,
20319096-20319168,20319860-20319939,20320283-20320404
Length = 176
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Frame = -1
Query: 721 LCSALQDSPQDERIRAEN--GGDGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVE---D 557
LC SP + R E G D D E + T+ SL P V L+ V+
Sbjct: 66 LCFVDFSSPPEARAALETLQGYKFDEHDHESSNLRTQFSLTPRRRWKVYNLLCFVDFATP 125
Query: 556 NSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFV 446
+ TL+ CC++T + C++ + +K++++
Sbjct: 126 SEARAALETLQDHCCMSTTIKGYACYSEQLSSKLFYL 162
>03_06_0485 + 34242121-34243188
Length = 355
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 447 TKYILFNISAVKQPRWRAKVARQHTARRVCCLVNVELSSTRPMRSGTISSKNGSKDSFVG 626
TK+ FN ++ QPR K R++ R L NV + T SSK+ S S G
Sbjct: 69 TKFCYFNNYSLSQPRHFCKTCRRYWTRG-GALRNVPVGGGCRRNKRTKSSKSSSSTSAAG 127
Query: 627 KRFTSLSTVS 656
+ T S
Sbjct: 128 SASATGGTSS 137
>03_06_0318 + 33103467-33104232,33104332-33105548
Length = 660
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -1
Query: 283 DETFRNEMLDALLQLSDIDPRTLMKKVKSNIHVYRNKSAYEKISSHLEKL 134
D++ NE+ DA+ + T M + ++ ++ ++ AY IS HL+KL
Sbjct: 459 DQSLVNEIRDAMRISRSEECETSMSRTARSLSLFEDEKAY--ISKHLKKL 506
>02_05_0372 + 28370589-28371857
Length = 422
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 625 PTKESLEPF-LDEMVPLLMGLVE-DNSTLTRQHTLRAVCCLATLARQRGCFTAD 470
P+++ LE L V L+GL+ ++S T+Q T+R V + RQ CF D
Sbjct: 360 PSEKVLEDMMLTGAVAKLLGLLHVESSPSTKQKTVRMVRIHGVVWRQYACFPTD 413
>10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681
Length = 486
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 589 FRPKTVPRILLWEKGLLPYRRCRHLHRSRPGCARPEGCPAARSTDTRRPR 738
F PK ++ WE + PY H+ R P A E P + + +RPR
Sbjct: 400 FPPKGNFNLVSWESRIPPYTSFVHMARFSPSLA--EDKPESHLSGRKRPR 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,068
Number of Sequences: 37544
Number of extensions: 448847
Number of successful extensions: 1879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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