Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a13
(802 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK000404-1|BAA91142.1| 235|Homo sapiens protein ( Homo sapiens ... 90 1e-17
BC047240-1|AAH47240.1| 855|Homo sapiens HEAT repeat containing ... 89 2e-17
BC010850-1|AAH10850.1| 223|Homo sapiens HEATR2 protein protein. 74 7e-13
BC050341-1|AAH50341.1| 1230|Homo sapiens cullin-associated and n... 36 0.17
BC026220-1|AAH26220.1| 1159|Homo sapiens CAND1 protein protein. 36 0.17
AF157326-1|AAF67492.1| 1230|Homo sapiens TIP120 protein protein. 36 0.17
AB020636-1|BAA74852.2| 1277|Homo sapiens KIAA0829 protein protein. 36 0.17
AK074886-1|BAC11267.1| 207|Homo sapiens protein ( Homo sapiens ... 32 2.8
M92844-1|AAC37600.1| 326|Homo sapiens zinc finger transcription... 31 4.8
M92843-1|AAA58489.1| 326|Homo sapiens zinc finger transcription... 31 4.8
M63625-1|AAA61240.1| 326|Homo sapiens tristetraproline protein. 31 4.8
BC009693-1|AAH09693.1| 326|Homo sapiens zinc finger protein 36,... 31 4.8
AY771351-1|AAV28731.1| 326|Homo sapiens zinc finger protein 36,... 31 4.8
J00231-1|AAA52805.1| 313|Homo sapiens IGHG3 protein. 30 8.5
BC146791-1|AAI46792.1| 1858|Homo sapiens myosin XVI protein. 30 8.5
AL390918-1|CAI15821.1| 1858|Homo sapiens protein ( Human DNA seq... 30 8.5
AL353143-1|CAH73221.1| 1858|Homo sapiens protein ( Human DNA seq... 30 8.5
AL161431-1|CAI15548.1| 1858|Homo sapiens protein ( Human DNA seq... 30 8.5
AL157771-1|CAI16366.1| 1858|Homo sapiens protein ( Human DNA seq... 30 8.5
AL136132-1|CAH70519.1| 1858|Homo sapiens protein ( Human DNA seq... 30 8.5
AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein. 30 8.5
AB020672-1|BAA74888.2| 1900|Homo sapiens KIAA0865 protein protein. 30 8.5
>AK000404-1|BAA91142.1| 235|Homo sapiens protein ( Homo sapiens
cDNA FLJ20397 fis, clone KAT00565. ).
Length = 235
Score = 89.8 bits (213), Expect = 1e-17
Identities = 71/220 (32%), Positives = 115/220 (52%)
Frame = -1
Query: 799 EEIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDKEVNLFPT 620
++I+ PN+ W AGRTA AIRTAAV+CL AL S E + AE D
Sbjct: 35 KDILAPNLQWHAGRTAAAIRTAAVSCLW-ALTSS---EVLSAEQIRD------------V 78
Query: 619 KESLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVL 440
+E+L +P ++ +E++S +TR + R + L G + L K+Y +L
Sbjct: 79 QETL-------MPQVLTTLEEDSKMTRLISCRIINTF--LKTSGGMTDPEKLIKIYPELL 129
Query: 439 KRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVHLDDVDETFRNEM 260
KRLDDVS+ VR A TL + + Y + V LY +LVHLDD + ++ +
Sbjct: 130 KRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAI 189
Query: 259 LDALLQLSDIDPRTLMKKVKSNIHVYRNKSAYEKISSHLE 140
L+ L + S + P L+++ ++ IH +R+ + E++ H++
Sbjct: 190 LEVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQHVQ 229
>BC047240-1|AAH47240.1| 855|Homo sapiens HEAT repeat containing 2
protein.
Length = 855
Score = 88.6 bits (210), Expect = 2e-17
Identities = 70/220 (31%), Positives = 115/220 (52%)
Frame = -1
Query: 799 EEIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDKEVNLFPT 620
++I+ PN+ W AGRTA AIRTAAV+CL AL S E + AE D
Sbjct: 655 KDILAPNLQWHAGRTAAAIRTAAVSCLW-ALTSS---EVLSAEQIRD------------V 698
Query: 619 KESLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVL 440
+E+L +P ++ +E++S +TR + R + L G + L ++Y +L
Sbjct: 699 QETL-------MPQVLTTLEEDSKMTRLISCRIINTF--LKTSGGMTDPEKLIRIYPELL 749
Query: 439 KRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVHLDDVDETFRNEM 260
KRLDDVS+ VR A TL + + Y + V LY +LVHLDD + ++ +
Sbjct: 750 KRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAI 809
Query: 259 LDALLQLSDIDPRTLMKKVKSNIHVYRNKSAYEKISSHLE 140
L+ L + S + P L+++ ++ IH +R+ + E++ H++
Sbjct: 810 LEVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQHVQ 849
>BC010850-1|AAH10850.1| 223|Homo sapiens HEATR2 protein protein.
Length = 223
Score = 73.7 bits (173), Expect = 7e-13
Identities = 63/182 (34%), Positives = 92/182 (50%)
Frame = -1
Query: 799 EEIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDKEVNLFPT 620
++I+ PN+ W AGRTA AIRTAAV+CL AL S E + AE D
Sbjct: 35 KDILAPNLQWHAGRTAAAIRTAAVSCLW-ALTSS---EVLSAEQIRD------------V 78
Query: 619 KESLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVL 440
+E+L +P ++ +E++S +TR + R + L G + L K+Y +L
Sbjct: 79 QETL-------MPQVLTTLEEDSKMTRLISCRIINTF--LKTSGGMTDPEKLIKIYPELL 129
Query: 439 KRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVHLDDVDETFRNEM 260
KRLDDVS+ VR A TL + + Y + V LY +LVHLDD + ++ +
Sbjct: 130 KRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAI 189
Query: 259 LD 254
LD
Sbjct: 190 LD 191
>BC050341-1|AAH50341.1| 1230|Homo sapiens cullin-associated and
neddylation-dissociated 1 protein.
Length = 1230
Score = 35.9 bits (79), Expect = 0.17
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -1
Query: 601 FLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDV 422
F+D + LL L +++S T T + C+A ++RQ G + L K+ +V+K +
Sbjct: 211 FVDLIEHLLSELSKNDSMST---TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 267
Query: 421 SDKVRSYAVQTLCNLFKNRPQ---PYDTTVYGAHVDALYSAMLVHLDDVDE 278
D++R Y +Q + + P+ P+ +T+ + L + DD DE
Sbjct: 268 DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318
>BC026220-1|AAH26220.1| 1159|Homo sapiens CAND1 protein protein.
Length = 1159
Score = 35.9 bits (79), Expect = 0.17
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -1
Query: 601 FLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDV 422
F+D + LL L +++S T T + C+A ++RQ G + L K+ +V+K +
Sbjct: 140 FVDLIEHLLSELSKNDSMST---TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 196
Query: 421 SDKVRSYAVQTLCNLFKNRPQ---PYDTTVYGAHVDALYSAMLVHLDDVDE 278
D++R Y +Q + + P+ P+ +T+ + L + DD DE
Sbjct: 197 DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 247
>AF157326-1|AAF67492.1| 1230|Homo sapiens TIP120 protein protein.
Length = 1230
Score = 35.9 bits (79), Expect = 0.17
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -1
Query: 601 FLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDV 422
F+D + LL L +++S T T + C+A ++RQ G + L K+ +V+K +
Sbjct: 211 FVDLIEHLLSELSKNDSMST---TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 267
Query: 421 SDKVRSYAVQTLCNLFKNRPQ---PYDTTVYGAHVDALYSAMLVHLDDVDE 278
D++R Y +Q + + P+ P+ +T+ + L + DD DE
Sbjct: 268 DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318
>AB020636-1|BAA74852.2| 1277|Homo sapiens KIAA0829 protein protein.
Length = 1277
Score = 35.9 bits (79), Expect = 0.17
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -1
Query: 601 FLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDV 422
F+D + LL L +++S T T + C+A ++RQ G + L K+ +V+K +
Sbjct: 258 FVDLIEHLLSELSKNDSMST---TRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD 314
Query: 421 SDKVRSYAVQTLCNLFKNRPQ---PYDTTVYGAHVDALYSAMLVHLDDVDE 278
D++R Y +Q + + P+ P+ +T+ + L + DD DE
Sbjct: 315 DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 365
>AK074886-1|BAC11267.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ90405 fis, clone NT2RP2006099. ).
Length = 207
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +1
Query: 676 PGCARPEGCPAARSTD-----TRRPRCVSPQRCDPPT 771
P CAR R+T RRPRC +P+R DPP+
Sbjct: 63 PRCARAASRGRQRATSGPRRSPRRPRCPAPRRADPPS 99
>M92844-1|AAC37600.1| 326|Homo sapiens zinc finger transcriptional
regulator protein.
Length = 326
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 756 PLRRYAPRPSRVCAPRCRTALRTSASGPRTVEMATPSIR 640
PL R P P VC P CR A S GP + TPS++
Sbjct: 239 PLARRDPTP--VCCPSCRRATPISVWGPLGGLVRTPSVQ 275
>M92843-1|AAA58489.1| 326|Homo sapiens zinc finger transcriptional
regulator protein.
Length = 326
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 756 PLRRYAPRPSRVCAPRCRTALRTSASGPRTVEMATPSIR 640
PL R P P VC P CR A S GP + TPS++
Sbjct: 239 PLARRDPTP--VCCPSCRRATPISVWGPLGGLVRTPSVQ 275
>M63625-1|AAA61240.1| 326|Homo sapiens tristetraproline protein.
Length = 326
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 756 PLRRYAPRPSRVCAPRCRTALRTSASGPRTVEMATPSIR 640
PL R P P VC P CR A S GP + TPS++
Sbjct: 239 PLARRDPTP--VCCPSCRRATPISVWGPLGGLVRTPSVQ 275
>BC009693-1|AAH09693.1| 326|Homo sapiens zinc finger protein 36,
C3H type, homolog (mouse) protein.
Length = 326
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 756 PLRRYAPRPSRVCAPRCRTALRTSASGPRTVEMATPSIR 640
PL R P P VC P CR A S GP + TPS++
Sbjct: 239 PLARRDPTP--VCCPSCRRATPISVWGPLGGLVRTPSVQ 275
>AY771351-1|AAV28731.1| 326|Homo sapiens zinc finger protein 36,
C3H type, homolog (mouse) protein.
Length = 326
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 756 PLRRYAPRPSRVCAPRCRTALRTSASGPRTVEMATPSIR 640
PL R P P VC P CR A S GP + TPS++
Sbjct: 239 PLARRDPTP--VCCPSCRRATPISVWGPLGGLVRTPSVQ 275
>J00231-1|AAA52805.1| 313|Homo sapiens IGHG3 protein.
Length = 313
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 658 HLHRSRPGCARPEGCPAARSTDTRR-PRCVSPQRCDPP 768
HL S PG +P T PRC P+ CD P
Sbjct: 22 HLQESGPGLGKPPELKTPLGDTTHTCPRCPEPKSCDTP 59
>BC146791-1|AAI46792.1| 1858|Homo sapiens myosin XVI protein.
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AL390918-1|CAI15821.1| 1858|Homo sapiens protein ( Human DNA sequence
from clone RP11-569E4 on chromosome 13 Contains part of
a novel gene (KIAA0865), possible ortholog of rat myosin
).
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AL353143-1|CAH73221.1| 1858|Homo sapiens protein ( Human DNA sequence
from clone RP11-383F12 on chromosome 13 Contains part of
a novel gene (including KIAA0865), possible ortholog of
rat asin A2 ).
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AL161431-1|CAI15548.1| 1858|Homo sapiens protein ( Human DNA sequence
from clone RP11-54H7 on chromosome 13 Contains the 3'
end a novel gene (including KIAA0865) possible ortholog
of ).
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AL157771-1|CAI16366.1| 1858|Homo sapiens protein ( Human DNA sequence
from clone RP11-67J18 on chromosome 13 Contains the 5'
end of a novel gene (including KIAA0865), possible
ortholog ).
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AL136132-1|CAH70519.1| 1858|Homo sapiens protein ( Human DNA sequence
from clone RP11-141M24 on chromosome 13q33.1-34 Contains
part of a novel gene, possible ortholog of rat myosin
heavy ).
Length = 1858
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1369 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1402
>AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein.
Length = 1183
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 481 FTADILNKMYFVVLKRLDDVSDKVRSYAVQTLCNLFKNRPQP 356
F+ ++ +Y + L+ +D+ D S+AV T C L RPQP
Sbjct: 810 FSVVSMSTLYVLSLRTEEDLVDTDGSFAVSTSCLLALLRPQP 851
>AB020672-1|BAA74888.2| 1900|Homo sapiens KIAA0865 protein protein.
Length = 1900
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 670 SRPGCARPEGCP--AARSTDTRRPRCVSPQRCDP 765
SRPG ARP G P AAR P+C P P
Sbjct: 1411 SRPGDARPAGAPGAAARVLTPGTPQCALPPAAPP 1444
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,517,300
Number of Sequences: 237096
Number of extensions: 2214526
Number of successful extensions: 7009
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6999
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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