Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a13
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical p... 29 2.9
Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical p... 29 2.9
Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical p... 29 2.9
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 29 3.9
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 3.9
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 3.9
Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical p... 28 6.8
Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical p... 28 6.8
Z98866-25|CAL22710.1| 325|Caenorhabditis elegans Hypothetical p... 28 8.9
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 28 8.9
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
D2045.2 protein.
Length = 1792
Score = 31.1 bits (67), Expect = 0.96
Identities = 29/117 (24%), Positives = 50/117 (42%)
Frame = -1
Query: 619 KESLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVL 440
KE +EP+ ++VP L D Q ++++ + T R+ + N++ +L
Sbjct: 1068 KEEIEPYFKQLVPKLFRFRYDPDVKV-QGAMKSIWGILTADRKN--VVDEFANEIAKELL 1124
Query: 439 KRLDDVSDKVRSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVHLDDVDETFR 269
L D +VR A L +L + +DT + A+L DDV E+ R
Sbjct: 1125 PALTDREYRVRESACLALSDLLRG----HDTVEMHKMIPEYLEAILRVRDDVKESVR 1177
>Z66524-3|CAB54303.1| 475|Caenorhabditis elegans Hypothetical
protein T13H5.6 protein.
Length = 475
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/72 (31%), Positives = 29/72 (40%)
Frame = +3
Query: 558 SSTRPMRSGTISSKNGSKDSFVGKRFTSLSTVSPSPPFSARMRSS*GLSCSAEHRHATAA 737
S+T S T + K VGK SLSTV PSP S +R S L + +
Sbjct: 372 STTSGSSSRTSGASLAHKTHIVGKGGISLSTVDPSPILSPGIRLSEQLGAKNQSYKSAFR 431
Query: 738 VRIASAVRPADH 773
V+ R H
Sbjct: 432 VQKTENARVISH 443
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 558 SSTRPMRSGTISSKNGSKDSFVGKRFTSLSTVSPSPPFSARMRSS*G 698
SST P S + S S G T+L+++SPSP S+ + SS G
Sbjct: 1090 SSTSPNPSQSTSPSTSGATSSPGSSGTTLTSISPSPSQSSTIGSSQG 1136
>Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 796 EIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDK 641
E + ++ W EA +++ L S +DS + R+ EN G+G+ + K
Sbjct: 90 EDVHASLAWILSNGKEAAPESSIGSLTSLDRDSWAEARVELENAGNGEYLKK 141
>Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 796 EIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDK 641
E + ++ W EA +++ L S +DS + R+ EN G+G+ + K
Sbjct: 260 EDVHASLAWILSNGKEAAPESSIGSLTSLDRDSWAEARVELENAGNGEYLKK 311
>Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 796 EIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDK 641
E + ++ W EA +++ L S +DS + R+ EN G+G+ + K
Sbjct: 90 EDVHASLAWILSNGKEAAPESSIGSLTSLDRDSWAEARVELENAGNGEYLKK 141
>Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 796 EIIMPNMIWSAGRTAEAIRTAAVACLCSALQDSPQDERIRAENGGDGDTVDK 641
E + ++ W EA +++ L S +DS + R+ EN G+G+ + K
Sbjct: 260 EDVHASLAWILSNGKEAAPESSIGSLTSLDRDSWAEARVELENAGNGEYLKK 311
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/98 (21%), Positives = 39/98 (39%)
Frame = -1
Query: 589 MVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSDKV 410
++P L + + + +HT + + +A GC L + +V LDD KV
Sbjct: 662 LLPFLKAVCKSKKSWQARHT--GIKIVQQMAILMGCAVLPHLKALVDIVESGLDDEQQKV 719
Query: 409 RSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVH 296
R+ L L PY + + + L+ + +H
Sbjct: 720 RTITALCLAAL-AEASSPYGIEAFDSVLKPLWKGIRMH 756
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/98 (21%), Positives = 39/98 (39%)
Frame = -1
Query: 589 MVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSDKV 410
++P L + + + +HT + + +A GC L + +V LDD KV
Sbjct: 662 LLPFLKAVCKSKKSWQARHT--GIKIVQQMAILMGCAVLPHLKALVDIVESGLDDEQQKV 719
Query: 409 RSYAVQTLCNLFKNRPQPYDTTVYGAHVDALYSAMLVH 296
R+ L L PY + + + L+ + +H
Sbjct: 720 RTITALCLAAL-AEASSPYGIEAFDSVLKPLWKGIRMH 756
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -1
Query: 595 DEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSD 416
D P+L + D S + R+H + + L + R F +I+ +M L +DV +
Sbjct: 1075 DRYAPMLAASLCDPSVIVRRHAINQIARLISFGIFR--FNGEIMIRMMLASLDANEDVRN 1132
Query: 415 KVRSYAVQTL 386
+ Y + L
Sbjct: 1133 DAKLYISEVL 1142
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -1
Query: 595 DEMVPLLMGLVEDNSTLTRQHTLRAVCCLATLARQRGCFTADILNKMYFVVLKRLDDVSD 416
D P+L + D S + R+H + + L + R F +I+ +M L +DV +
Sbjct: 1075 DRYAPMLAASLCDPSVIVRRHAINQIARLISFGIFR--FNGEIMIRMMLASLDANEDVRN 1132
Query: 415 KVRSYAVQTL 386
+ Y + L
Sbjct: 1133 DAKLYISEVL 1142
>Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 673 ENGGDGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVEDNSTLTRQHTL 527
+N D D K ++ P K E +DE+V ++ L+ DN+++T TL
Sbjct: 196 DNWSDPDKKKKMLDRMPIKRFAE--VDEVVNAVLFLLSDNASMTTGSTL 242
>Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 673 ENGGDGDTVDKEVNLFPTKESLEPFLDEMVPLLMGLVEDNSTLTRQHTL 527
+N D D K ++ P K E +DE+V ++ L+ DN+++T TL
Sbjct: 196 DNWSDPDKKKKMLDRMPIKRFAE--VDEVVNAVLFLLSDNASMTTGSTL 242
>Z98866-25|CAL22710.1| 325|Caenorhabditis elegans Hypothetical
protein Y49E10.28 protein.
Length = 325
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Frame = -1
Query: 469 ILNKMYFVVLKRLDDVSDKVRSYAVQTLCN-----LFKNRPQPYD-------TTVYGAHV 326
++ + +F V+K L++V+ K + L N LFKN +D T V G
Sbjct: 164 VIKETFFHVIKCLNNVTIKASKPSTSRLLNVLIEQLFKNLQCRFDKWQGYCSTEVLGCFY 223
Query: 325 DALYSAMLVHLDDVDET 275
+YS +L LD++ +T
Sbjct: 224 TQIYSNLLPQLDELHKT 240
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 649 RCRHLHRSRPGCARPEGCPAARSTDTRRPR 738
R R R+ PEG PA RST++RR R
Sbjct: 740 RTRSARRAAENGHPPEGPPAKRSTNSRRDR 769
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,902
Number of Sequences: 27780
Number of extensions: 366215
Number of successful extensions: 1339
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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