Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a11
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    31   0.88 
07_02_0004 + 11658755-11659423                                         28   8.2  
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545...    28   8.2  

>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 434 VIWDNGLHKFLYPGFEFMIKIKELGDGFNKPNVVDV 327
           +IWD  +HK +Y  +  +IK+  + +G    N+ ++
Sbjct: 422 IIWDANVHKHIYAEYAVIIKVPYMNNGDTASNISEI 457


>07_02_0004 + 11658755-11659423
          Length = 222

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 734 YDFKQYSLDHSDFTAYCK--SKRVIVDKEIEVGNLVAYKSLSGT-AYERAVILELIKPGN 564
           Y   +YS+DH  F+ Y K   +   VD EI+   L  + + SGT  Y +  I+     G+
Sbjct: 62  YPNGKYSMDHGAFSFYLKLIDRSKGVDAEIQFSLLPRHGADSGTLPYSKPEIMHTF--GS 119

Query: 563 KLRLQKIDWGDIVTATQME 507
             R  K  +   ++  +ME
Sbjct: 120 ARRNSKCGFNWFISRDEME 138


>07_01_0714 -
           5451246-5451408,5453401-5453534,5453608-5453796,
           5454313-5454825,5455815-5456856,5457283-5457380,
           5458224-5458451
          Length = 788

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 PKLLNFDHKFKAWIQEFMQAIIP 428
           PKL N  H+F + +QEF + + P
Sbjct: 442 PKLSNSAHRFNSMVQEFFEDVAP 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,314
Number of Sequences: 37544
Number of extensions: 366376
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)