Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a11
(849 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111719-1|AAI11720.2| 1147|Homo sapiens caspase recruitment dom... 36 0.25
AK074049-1|BAB84875.1| 1171|Homo sapiens FLJ00120 protein protein. 36 0.25
AF352576-1|AAL34460.1| 1147|Homo sapiens CARD-containing MAGUK p... 36 0.25
AC004906-1|AAQ96893.1| 1147|Homo sapiens unknown protein. 36 0.25
AF322641-1|AAG53402.1| 1147|Homo sapiens caspase recruitment dom... 34 0.75
L34060-1|AAA35628.1| 793|Homo sapiens cadherin-8 protein. 30 9.2
BC113416-1|AAI13417.1| 799|Homo sapiens cadherin 8, type 2 prot... 30 9.2
AB035305-1|BAA87419.1| 799|Homo sapiens cadherin-8 protein. 30 9.2
>BC111719-1|AAI11720.2| 1147|Homo sapiens caspase recruitment domain
family, member 11 protein.
Length = 1147
Score = 35.5 bits (78), Expect = 0.25
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 842 NLSNQNSKC-LNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVI 666
N+S+Q C ++L D+V+HVR + + AR F + LD +Y ++++++
Sbjct: 776 NISSQLDACTMSLKCDDVVHVRDTMYQDRHEWLCARVDPFTDHDLDMGTIPSYSRAQQLL 835
Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKL 558
+ K + + + + + GT + + ++P L
Sbjct: 836 LVKLQRLMHRGSREEVDGTHHTLRALRNTLQPEEAL 871
>AK074049-1|BAB84875.1| 1171|Homo sapiens FLJ00120 protein protein.
Length = 1171
Score = 35.5 bits (78), Expect = 0.25
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 842 NLSNQNSKC-LNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVI 666
N+S+Q C ++L D+V+HVR + + AR F + LD +Y ++++++
Sbjct: 800 NISSQLDACTMSLKCDDVVHVRDTMYQDRHEWLCARVDPFTDHDLDMGTIPSYSRAQQLL 859
Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKL 558
+ K + + + + + GT + + ++P L
Sbjct: 860 LVKLQRLMHRGSREEVDGTHHTLRALRNTLQPEEAL 895
>AF352576-1|AAL34460.1| 1147|Homo sapiens CARD-containing MAGUK
protein CARMA1 protein.
Length = 1147
Score = 35.5 bits (78), Expect = 0.25
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 842 NLSNQNSKC-LNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVI 666
N+S+Q C ++L D+V+HVR + + AR F + LD +Y ++++++
Sbjct: 776 NISSQLDACTMSLKCDDVVHVRDTMYQDRHEWLCARVDPFTDHDLDMGTIPSYSRAQQLL 835
Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKL 558
+ K + + + + + GT + + ++P L
Sbjct: 836 LVKLQRLMHRGSREEVDGTHHTLRALRNTLQPEEAL 871
>AC004906-1|AAQ96893.1| 1147|Homo sapiens unknown protein.
Length = 1147
Score = 35.5 bits (78), Expect = 0.25
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 842 NLSNQNSKC-LNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVI 666
N+S+Q C ++L D+V+HVR + + AR F + LD +Y ++++++
Sbjct: 776 NISSQLDACTMSLKCDDVVHVRDTMYQDRHEWLCARVDPFTDHDLDMGTIPSYSRAQQLL 835
Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKL 558
+ K + + + + + GT + + ++P L
Sbjct: 836 LVKLQRLMHRGSREEVDGTHHTLRALRNTLQPEEAL 871
>AF322641-1|AAG53402.1| 1147|Homo sapiens caspase recruitment domain
protein 11 protein.
Length = 1147
Score = 33.9 bits (74), Expect = 0.75
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 842 NLSNQNSKC-LNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVI 666
N+S+Q C ++L D+V+HVR + + AR F + LD +Y ++++++
Sbjct: 776 NISSQLDACTMSLKCDDVVHVRDTMYQDRHEWPCARVDPFTDHDLDMGTIPSYSRAQQLL 835
Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKL 558
+ K + + + + + GT + + ++P L
Sbjct: 836 LVKLQRLMHRGSREEVDGTHHTLRALRNTLQPEEAL 871
>L34060-1|AAA35628.1| 793|Homo sapiens cadherin-8 protein.
Length = 793
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = -2
Query: 578 IKPGNKLRLQKIDWGDIVTATQMELKPITCDMY----INKPAMAIYCSTGKSVIWDNGLH 411
+ PG+K +++ I GD T ++ +T D++ +++ A Y T ++V W+
Sbjct: 82 LDPGSK-KIKYILSGD-GAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETS-- 137
Query: 410 KFLYPGFEFMIKIKELGD 357
K L P EF+IK++++ D
Sbjct: 138 KPLEPPSEFIIKVQDIND 155
>BC113416-1|AAI13417.1| 799|Homo sapiens cadherin 8, type 2
protein.
Length = 799
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = -2
Query: 578 IKPGNKLRLQKIDWGDIVTATQMELKPITCDMY----INKPAMAIYCSTGKSVIWDNGLH 411
+ PG+K +++ I GD T ++ +T D++ +++ A Y T ++V W+
Sbjct: 89 LDPGSK-KIKYILSGD-GAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETS-- 144
Query: 410 KFLYPGFEFMIKIKELGD 357
K L P EF+IK++++ D
Sbjct: 145 KPLEPPSEFIIKVQDIND 162
>AB035305-1|BAA87419.1| 799|Homo sapiens cadherin-8 protein.
Length = 799
Score = 30.3 bits (65), Expect = 9.2
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = -2
Query: 578 IKPGNKLRLQKIDWGDIVTATQMELKPITCDMY----INKPAMAIYCSTGKSVIWDNGLH 411
+ PG+K +++ I GD T ++ +T D++ +++ A Y T ++V W+
Sbjct: 89 LDPGSK-KIKYILSGD-GAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETS-- 144
Query: 410 KFLYPGFEFMIKIKELGD 357
K L P EF+IK++++ D
Sbjct: 145 KPLEPPSEFIIKVQDIND 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,088,027
Number of Sequences: 237096
Number of extensions: 2113617
Number of successful extensions: 10719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10719
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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