Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a11
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    31   1.4  
Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    28   7.3  
U41009-5|AAO44915.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    28   7.3  
U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
 Frame = -2

Query: 839 LSNQNS-KCLNLHIDEVLHVRVQSGKTLDSFFVA-RTYDFKQYSLDHSDFTAYCKSKRVI 666
           L+N++  K L+L ++  L +R      L++   + R++D     LD  DF   CK+   +
Sbjct: 42  LNNRSQQKLLHLGLNGQLILRRDWINKLNNMLPSLRSFDMSNSQLDAKDFFRLCKNFPNL 101

Query: 665 VDKEIEVGNLVAYKSLSGTAYERAVILELIKPGNKLRLQKIDWGDIVTATQMELKPITCD 486
              +I    L    ++SG    R   L+++K  N       D  D+   T++++  ++C+
Sbjct: 102 EFLDIRETGL---STISG--LNRLQNLQILKMQNMEFHNHFDIIDLFGLTKLKILDVSCN 156

Query: 485 MYINK 471
            Y+ K
Sbjct: 157 RYLKK 161


>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 758 QVFFLIGHGHVELHQYANSGTWN 826
           Q+ +L G  HVEL+ Y  SG W+
Sbjct: 180 QLSYLSGKRHVELNDYLPSGVWD 202


>U41009-5|AAO44915.1|  173|Caenorhabditis elegans Hypothetical
           protein C06E7.1d protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 647 VGNLVAYKSLSGTAYERAVILELIKPGNKLR-LQKIDWGDIVTATQMELKPITCDMYINK 471
           +G L+ Y      +  R  +  L    N L+ L +  W  IVT ++ E+K +  DM + K
Sbjct: 108 LGLLIKYSIQFQDSITRHAMFLLHSNNNHLKSLLESTWTRIVTMSEPEIKELCLDMLLMK 167

Query: 470 P 468
           P
Sbjct: 168 P 168


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 758 QVFFLIGHGHVELHQYANSGTWN 826
           Q+ +L G  HVEL+ Y  SG W+
Sbjct: 180 QLSYLSGKRHVELNDYLPSGVWD 202


>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/74 (24%), Positives = 31/74 (41%)
 Frame = -2

Query: 830 QNSKCLNLHIDEVLHVRVQSGKTLDSFFVARTYDFKQYSLDHSDFTAYCKSKRVIVDKEI 651
           Q  K +  HI  +L  R    KTLD+ F  R Y + Q  L+ +    +     +I +   
Sbjct: 206 QRCKNVLFHI-AILVTRFVQMKTLDTMFSNRNYPWIQVELNEAQRPLFASRAEMIFESVR 264

Query: 650 EVGNLVAYKSLSGT 609
            + N + +   + T
Sbjct: 265 PINNRIKFFGAAST 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,433
Number of Sequences: 27780
Number of extensions: 364205
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)