Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a10
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    56   4e-09
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    32   0.11 
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.58 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   2.4  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   2.4  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.1  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    27   3.1  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    27   4.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   4.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   4.1  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   5.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   7.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.5  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.5  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 13/226 (5%)
 Frame = -3

Query: 756 GDSGDVYPDLVPPHTEN---AVNALIQLSKTHE-GNLTIITIGALTNLALAIKTDPAFLG 589
           G  G V P   P   EN   AV+ +I   + +E G +TI TIG LTN+ALA+   P  + 
Sbjct: 84  GFEGAVLPP--PSRKENEGHAVDFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQ 141

Query: 588 RLAHVYIGAGHIHT--EEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFSQV-QKYCNF 418
           R   + + AG         P AEFN ++D  A  +V  +  P  + + P     Q + + 
Sbjct: 142 RAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAAQMVLSSGIP--IVMMPLDITHQLHTSA 199

Query: 417 SREWRI----NVLGAINTEIIRAQNKYERISLPREDRWQALDPATVALFLRPDLVQEYKY 250
            R  R+    N +G +    +R +  YE       D     DP TV   LRPD+    K 
Sbjct: 200 KRIARMEALPNRVGPVVAAWLRMEKAYEAKKY-GTDGGPLHDPNTVMWLLRPDIYSGRKV 258

Query: 249 SKNSIALCGENRGITSNSF--VDKEDANVRIAYSVKTEEYRQFLLD 118
           +           G++   +  V    ANV    +V  +E+ + L++
Sbjct: 259 NVQIETQSELTMGMSVVDWWQVGLLPANVTFLRTVDDDEFYEVLIE 304


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -3

Query: 708 NAVNALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHTE 544
           +A   +I + K +   +TI+  G +TNLA+A+   P        + I  G++ ++
Sbjct: 135 SAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDSQ 189


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 170 FASLTLS-RLKNIDNFYWISSRTMPENSPNDNTRNTD*SPKIETCRRI 30
           ++SL+++ R+K   N  ++ S+ +P+N+   +  N D  P   T + +
Sbjct: 221 YSSLSIAERIKQAQNTPFLESKVLPQNNETSDEENVDVKPAAGTVKNV 268


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 461 LQYSPSHRCRNIVTLAGSG 405
           L YS   RC NIV +AGSG
Sbjct: 742 LTYSAIRRCDNIVLIAGSG 760


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = -3

Query: 390 GAINTEIIRAQNK-YERISLPREDRWQALDPA-TVALFLRPDLVQEYKYSKNSIALCGEN 217
           G    EI++ QN+ ++ +   R D  + ++    V L    D + +Y   ++S+ L  + 
Sbjct: 18  GKAEIEILKKQNELFQPLFEQRRDILKTINNFWVVVLEAAGDEISQYITPEDSVLL-EKL 76

Query: 216 RGITSNSFVDKEDANVRIAYSVKTEEYRQ 130
             I    F +KE  +VRI+ + +  EY Q
Sbjct: 77  ENIYVERFNEKEPRDVRISLTFQPNEYLQ 105


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 789 EITDYFGKDGLGDSGDVYPDLVPPHTENA 703
           E+ ++F  DGL D G   P + PP   +A
Sbjct: 61  EMREFFNFDGLPDQGLNLPSIAPPSLSHA 89


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
 Frame = -3

Query: 606 DPAFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFSQVQKY 427
           D AF   L+  Y   GH H + +P+A  + + D      + E+A+P +       ++ + 
Sbjct: 2   DEAFGDSLSTDYRWLGHSHFDSHPSAGDSIYFD-----SLDEDADPSRTA--RIDRIAEL 54

Query: 426 CNFSREWRIN-VLGAINTEIIRAQNKYERISLPREDRWQALD--PATVALFLRP 274
            +   + +I+ ++  +N+  I+   K E IS P +     L+  P +  LFL P
Sbjct: 55  LDGLNDEQISELVNGVNSTTIKENTKKE-ISNPNDSTRLPLEQIPGSNNLFLDP 107


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 185 KKTPMFASLTLSRLKNIDNFYWISS 111
           KKTP +  +T      IDN+ W  +
Sbjct: 224 KKTPSYREITTPAYSKIDNYIWFGA 248


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 678  KTHEGNLTIITI-GALTNLALAIKTDPAFLGRLAHVYIGAGHI 553
            +T   +L I+T   ALTN  L      A LGRLA V I   H+
Sbjct: 1284 ETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHL 1326


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 678  KTHEGNLTIITI-GALTNLALAIKTDPAFLGRLAHVYIGAGHI 553
            +T   +L I+T   ALTN  L      A LGRLA V I   H+
Sbjct: 1284 ETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHL 1326


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 419 KLQYFCTCEKGNIVTFSGFA-FSVTTW 496
           K  +   C+KGN+V   GF+ FS+  W
Sbjct: 105 KQDFLNDCKKGNLVREDGFSIFSILRW 131


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 795 PPEITDYFGKDGLGDSGDVYPD----LVPPHTENAVNALIQLSKTHEGNL 658
           P +I+    ++ L D   VYPD    + PP    A  AL   +  HEG+L
Sbjct: 260 PTKISFKSLRESLKDPEYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSL 309


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 702 VNALIQLSKTHEGNLTIITIGALTNLALAIKTD 604
           ++ +  ++KTH    T +T G++    +  KTD
Sbjct: 65  ISTIYPVNKTHHTEYTTLTDGSIDTYTITAKTD 97


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 181 RRQCSHRLLCQD*RISTIFTGSLLERCLRIH 89
           R   +  L C D     IFTG+   +CL IH
Sbjct: 419 RMNSTKALACLDYLNENIFTGNQTMKCLEIH 449


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 203  VIRLSIKKTPMFASLTLSRLKNIDN 129
            VI ++I K PM+    L++ KN+ N
Sbjct: 977  VIDVNINKLPMYRESNLTKYKNLQN 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,809
Number of Sequences: 5004
Number of extensions: 75294
Number of successful extensions: 228
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)