Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a10
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 58 6e-09
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 58 8e-09
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 55 6e-08
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 32 0.61
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 31 0.81
05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448... 31 0.81
06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523 30 2.5
06_03_0876 - 25593744-25594046,25594747-25594902,25594986-255950... 29 5.7
05_06_0118 + 25735966-25737601,25737698-25738488 28 7.6
03_04_0006 + 16257288-16259522 28 7.6
03_02_0090 - 5564326-5567280 28 7.6
10_01_0170 - 1911706-1911795,1911896-1912453 28 10.0
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 58.4 bits (135), Expect = 6e-09
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = -3
Query: 771 GKDGLGDSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFL 592
G DGLG+ + P P ++A L++ + + G +T++ +G LTNLALAI+ DP+F
Sbjct: 69 GSDGLGNQ-NFPPPTGKPLDQSAAAFLVEQANLYPGQVTVVALGPLTNLALAIELDPSFP 127
Query: 591 GRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEAYHVV 487
++ + I GA ++ P AE N D +A +V
Sbjct: 128 KKIGQIVILGGAYSVNGNVNPAAEANIFGDPDAADIV 164
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 58.0 bits (134), Expect = 8e-09
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = -3
Query: 792 PEITDYF-GKDGLGDSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTNLALA 616
P + D+ G DGLG++ P ++A L+ G ++++ +G LTN+ALA
Sbjct: 103 PHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVSESPGEISVLALGPLTNIALA 162
Query: 615 IKTDPAFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEAYHVV 487
+K D +F ++ + + GA P+AE N H D EA +V
Sbjct: 163 MKKDSSFASKVKRIVVLGGAFFAAGNATPSAEANIHSDPEAADIV 207
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 55.2 bits (127), Expect = 6e-08
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = -3
Query: 792 PEITDYF-GKDGLGDSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTNLALA 616
P + D+ G DGLG+ P ENA ++ G ++I+ +G LTN+ALA
Sbjct: 107 PRVADFVHGSDGLGNLFLPAPTSKKVD-ENAAEFMVNKVSQFPGEVSILALGPLTNVALA 165
Query: 615 IKTDPAFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEAYHVV-TENANPEKVTIFPF 445
IK DP+F ++ + + GA P AE N + D EA +V T A+ + V I
Sbjct: 166 IKRDPSFASKVKKIVVLGGAFFAAGNVSPAAEANIYGDPEAADIVFTSGADVDVVGINIT 225
Query: 444 SQV 436
+QV
Sbjct: 226 TQV 228
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 31.9 bits (69), Expect = 0.61
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Frame = -3
Query: 660 LTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHTE--------EYPT---AEFNAH 514
+TI+T G LTNLA + +D + VY+ GHI + P+ AEFN
Sbjct: 661 ITILTNGPLTNLANIVLSDRNASSVIKSVYVVGGHIRDDSNTKGNVFSVPSNTYAEFNIF 720
Query: 513 MDVEAYHVVTENANPEKVTIFPFSQVQKYCNF 418
+D A V ++ +T+ P +K +F
Sbjct: 721 LDPLAAKTVLDST--LDITLIPLRAQRKAASF 750
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -3
Query: 666 GNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHTEE-----------YPTAEFN 520
G T++ GA TNLAL + P + VY+ G + + P AEFN
Sbjct: 151 GPTTVLLFGAHTNLALLLMAHPRLARNIDRVYVSGGAVRAADPAGNLFTAFATNPFAEFN 210
Query: 519 AHMDVEAYHVVTENANPEKVTIFP 448
D A + V + P +T+ P
Sbjct: 211 IFGDPFAAYQVIHSGIP--ITMIP 232
>05_03_0248 +
10942363-10942612,10942702-10943345,10944301-10944816,
10945085-10945237,10945545-10945637
Length = 551
Score = 31.5 bits (68), Expect = 0.81
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = -3
Query: 612 KTDPAFLGRLA-HVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEKVTI-FPFSQ 439
+TD A A HVY G+ E PT +A+ + + ++ +P +P ++
Sbjct: 385 RTDAARFPYAAYHVYCSPGNARAAEEPTTYCDAYSNPQPQEILQLVPHPVWGEFGYPTAK 444
Query: 438 VQKYCNFSREWRINVLGAINTEIIRAQNKYERISLPREDRWQALDPAT 295
Q + R W ++V GA++ + Q+ + P + RW +LD T
Sbjct: 445 GQGWIGDPRTWELDV-GALSQALYFYQDPG---TPPAKRRWSSLDVGT 488
>06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523
Length = 465
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -3
Query: 375 EIIRAQNKYERISLPREDRWQALDPATVALFLRPDLVQEYKYSKNSIALCGENRGITSNS 196
EI+ KYE + L E R + ATV L DL + + + N+ ++ R +
Sbjct: 221 EIVEGLTKYEPVDLDAEQRVRCYRRATVGLHSHKDLSIDPRRAPNNYSMVDFKRFLMWRY 280
Query: 195 FVDKEDANVRIAYSVKTEEYRQFLLD 118
+ +E A +R+ K+++ R +++
Sbjct: 281 ALPREHA-IRMEEEDKSKKPRLLVIN 305
>06_03_0876 -
25593744-25594046,25594747-25594902,25594986-25595095,
25595429-25595520,25595613-25595657,25595775-25595920,
25596027-25596114,25596251-25596281,25596388-25596413,
25596617-25596939
Length = 439
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = -3
Query: 438 VQKYCNFSREWRINVLGAINTEIIRAQNKYERISLPREDRWQA-----LDPATVALFLRP 274
++K NFS+E + VL +R +++ ++L + +W+A + V L L
Sbjct: 154 IKKMNNFSKEEFVQVLRRQGAGFVRGSSRFRGVTLHKCGKWEARIGQLMGKKYVYLGLYD 213
Query: 273 DLVQEYK-YSKNSIALCGENRGITSNSFVDKEDANVR 166
++ K Y K +I CG+ ++ +++ N++
Sbjct: 214 TEMEAAKAYDKAAIKCCGKEAVTNFDTQAYEDELNLQ 250
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 157 VSDANIGVFFIDKRITCDAP 216
+ +AN+G F+DK++ C P
Sbjct: 506 LQEANLGTMFLDKKVVCSKP 525
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -3
Query: 639 ALTNLALAIKTDPAFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVT----ENAN 472
A+T A+ DP L H G I T + + + + DV A+H VT EN+
Sbjct: 630 AVTADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENST 689
Query: 471 PEKVT 457
P T
Sbjct: 690 PAWTT 694
>03_02_0090 - 5564326-5567280
Length = 984
Score = 28.3 bits (60), Expect = 7.6
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -3
Query: 351 YERISLPR---EDRWQALDPATVALFLRPDLVQEYKYSKNSIALCGENRGITSNSFVDKE 181
Y +S+PR R++ A+ AL LVQE A+C RG+ S + +
Sbjct: 106 YAALSMPRLRLVARYRIGKRASRALRQAQQLVQERG------AICAARRGVGSFAATTHQ 159
Query: 180 DANVRIAYSVKTEEYRQFLLDLFSNDA 100
A A +V TE+Y + L ++DA
Sbjct: 160 SAPTPAAAAVGTEDYLKEALGYIADDA 186
>10_01_0170 - 1911706-1911795,1911896-1912453
Length = 215
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 272 SGLRNNATVAGSKACHLSSLGSEILSYLF 358
S + N A +KA HL+SL E SYLF
Sbjct: 40 SRIENLARFGTAKAVHLNSLSQEEYSYLF 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,432,248
Number of Sequences: 37544
Number of extensions: 485721
Number of successful extensions: 1210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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