Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a10
(803 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089659-1|AAL90397.1| 344|Drosophila melanogaster RH22417p pro... 84 2e-16
AE014298-1941|AAG22352.1| 344|Drosophila melanogaster CG11158-P... 84 2e-16
AE014134-2209|AAF53198.1| 355|Drosophila melanogaster CG5418-PA... 73 3e-13
BT021941-1|AAX51646.1| 362|Drosophila melanogaster RE18811p pro... 52 7e-07
AE014298-1940|AAF48302.1| 362|Drosophila melanogaster CG12177-P... 52 7e-07
BT022312-1|AAY54728.1| 185|Drosophila melanogaster IP11340p pro... 46 5e-05
AL031028-1|CAA19845.2| 1795|Drosophila melanogaster EG:56G7.1 pr... 37 0.028
AE014298-231|AAF45644.1| 1795|Drosophila melanogaster CG14796-PA... 37 0.028
AE014297-4166|AAF56739.2| 458|Drosophila melanogaster CG12879-P... 33 0.46
AY061521-1|AAL29069.1| 350|Drosophila melanogaster LD47568p pro... 31 2.4
AE014296-2112|AAF49944.1| 350|Drosophila melanogaster CG5632-PA... 31 2.4
AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-P... 30 4.3
U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interr... 29 9.8
AJ620303-1|CAF04330.1| 350|Drosophila melanogaster THO complex ... 29 9.8
>AY089659-1|AAL90397.1| 344|Drosophila melanogaster RH22417p
protein.
Length = 344
Score = 84.2 bits (199), Expect = 2e-16
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Frame = -3
Query: 789 EITDYF-GKDGLGDSG-----DVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTN 628
E T+ F G+DGL D G DV +L P H AVNA+ +L++ + G + + G LTN
Sbjct: 88 EYTNCFHGQDGLNDVGNYPVVDVEQELQPEH---AVNAMYRLARANPGQVDFLLCGPLTN 144
Query: 627 LALAIKT-DPAFLGRLAHVYIGAGHIHTEEYPT--AEFNAHMDVEAYHVVTENANPEKVT 457
A I +FL + VYI G+I + T AEFN MD EA H+ E E
Sbjct: 145 FANCINLYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERL-LEPAI 203
Query: 456 IFPFSQ-VQKYCNFSREWRINVLGAINTEIIRAQNKYERISL-PRE-DRWQALDPATVAL 286
I P+ + + + +WR+NVLGA++ I + ER L PR +W + D A
Sbjct: 204 ILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGFVKWISCDSLLTAA 263
Query: 285 FLRPD-LVQEYKYSKNSIALCG 223
+L PD ++ E + ++ L G
Sbjct: 264 YLFPDAMIAEQRQYYATVELSG 285
>AE014298-1941|AAG22352.1| 344|Drosophila melanogaster CG11158-PA
protein.
Length = 344
Score = 84.2 bits (199), Expect = 2e-16
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Frame = -3
Query: 789 EITDYF-GKDGLGDSG-----DVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTN 628
E T+ F G+DGL D G DV +L P H AVNA+ +L++ + G + + G LTN
Sbjct: 88 EYTNCFHGQDGLNDVGNYPVVDVEQELQPEH---AVNAMYRLARANPGQVDFLLCGPLTN 144
Query: 627 LALAIKT-DPAFLGRLAHVYIGAGHIHTEEYPT--AEFNAHMDVEAYHVVTENANPEKVT 457
A I +FL + VYI G+I + T AEFN MD EA H+ E E
Sbjct: 145 FANCINLYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERL-LEPAI 203
Query: 456 IFPFSQ-VQKYCNFSREWRINVLGAINTEIIRAQNKYERISL-PRE-DRWQALDPATVAL 286
I P+ + + + +WR+NVLGA++ I + ER L PR +W + D A
Sbjct: 204 ILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGFVKWISCDSLLTAA 263
Query: 285 FLRPD-LVQEYKYSKNSIALCG 223
+L PD ++ E + ++ L G
Sbjct: 264 YLFPDAMIAEQRQYYATVELSG 285
>AE014134-2209|AAF53198.1| 355|Drosophila melanogaster CG5418-PA
protein.
Length = 355
Score = 73.3 bits (172), Expect = 3e-13
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Frame = -3
Query: 789 EITDYFGKDGLGDSGDVYPDLVPPHT----ENAVNALIQLSKTHEGNLTIITIGALTNLA 622
+I+ + G DGL D G YPD+ E+AVNA+ +L + + + G LTN A
Sbjct: 93 DISRFHGTDGLNDIGG-YPDVSDLQEQLQQEHAVNAMYRLVCQYPKQVDFLLCGPLTNFA 151
Query: 621 LAIKT-DPAFLGRLAHVYIGAGHIHTEE--YPTAEFNAHMDVEAYHVVTENANPEKVTIF 451
I FL ++ ++I G+I+ AEFN MD EA H E V I
Sbjct: 152 SCINLYGDDFLDKIGGIFIMGGNIYGRGNIMKCAEFNFMMDPEAAHTTLERLKVPAV-IL 210
Query: 450 PFS-QVQKYCNFSREWRINVLGAINTEIIRAQNKYERISL-PRE-DRWQALDPATVALFL 280
P+ + N S +WR++VLG+++ ++ ++ ER L PR+ W D A A ++
Sbjct: 211 PWEPSIDDDFNLSLDWRLDVLGSVDHPLVELLSRVERSMLVPRDIKHWINPDAALAAAYI 270
Query: 279 RP 274
P
Sbjct: 271 FP 272
>BT021941-1|AAX51646.1| 362|Drosophila melanogaster RE18811p
protein.
Length = 362
Score = 52.4 bits (120), Expect = 7e-07
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Frame = -3
Query: 777 YFGKDGLGD--SGDVYPDLVP-PHTENAVNALIQLSKTHEGNLTIITIGALTNLALAIKT 607
+ G+DG GD + D L E+AV A+ L ++ +TI +G LTNLAL
Sbjct: 108 FHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQITIFAVGPLTNLALGYTM 167
Query: 606 -DPAFLGRLAHVYIGAGHIH--TEEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFSQ- 439
P F ++I G+ +AEFN H D EA H V +TI P+
Sbjct: 168 YGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNFHSDPEAAHTVLLRTRC-PITILPWEAC 226
Query: 438 VQKYCNFSREWRINVLGAINTE----IIRAQNKYERIS-LPR-----EDRWQALDPATVA 289
+ + N WR+ A E I N+ E LP D W D VA
Sbjct: 227 LPERFNIHINWRLKDFAARAKEAGHPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVA 286
Query: 288 LFLRPD-LVQEYKYSKNSIALCG-ENRGITSNSFV---DKEDANVRIAYSVKTEEYRQ 130
++L D L++ + ++ L G RG + +K NVRI V E +++
Sbjct: 287 VWLFEDHLIRRHNTWHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKR 344
>AE014298-1940|AAF48302.1| 362|Drosophila melanogaster CG12177-PA
protein.
Length = 362
Score = 52.4 bits (120), Expect = 7e-07
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Frame = -3
Query: 777 YFGKDGLGD--SGDVYPDLVP-PHTENAVNALIQLSKTHEGNLTIITIGALTNLALAIKT 607
+ G+DG GD + D L E+AV A+ L ++ +TI +G LTNLAL
Sbjct: 108 FHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQITIFAVGPLTNLALGYTM 167
Query: 606 -DPAFLGRLAHVYIGAGHIH--TEEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFSQ- 439
P F ++I G+ +AEFN H D EA H V +TI P+
Sbjct: 168 YGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNFHSDPEAAHTVLLRTRC-PITILPWEAC 226
Query: 438 VQKYCNFSREWRINVLGAINTE----IIRAQNKYERIS-LPR-----EDRWQALDPATVA 289
+ + N WR+ A E I N+ E LP D W D VA
Sbjct: 227 LPERFNIHINWRLKDFAARAKEAGHPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVA 286
Query: 288 LFLRPD-LVQEYKYSKNSIALCG-ENRGITSNSFV---DKEDANVRIAYSVKTEEYRQ 130
++L D L++ + ++ L G RG + +K NVRI V E +++
Sbjct: 287 VWLFEDHLIRRHNTWHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKR 344
>BT022312-1|AAY54728.1| 185|Drosophila melanogaster IP11340p
protein.
Length = 185
Score = 46.4 bits (105), Expect = 5e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = -3
Query: 531 AEFNAHMDVEAYHVVTENANPEKVTIFPFS-QVQKYCNFSREWRINVLGAINTEIIRAQN 355
AEFN MD EA H E V I P+ + N S +WR++VLG+++ ++ +
Sbjct: 15 AEFNFMMDPEAAHTTLERLKVPAV-ILPWEPSIDDDFNLSLDWRLDVLGSVDHPLVELLS 73
Query: 354 KYERISL-PRE-DRWQALDPATVALFLRP 274
+ ER L PR+ W D A A ++ P
Sbjct: 74 RVERSMLVPRDIKHWINPDAALAAAYIFP 102
>AL031028-1|CAA19845.2| 1795|Drosophila melanogaster EG:56G7.1
protein.
Length = 1795
Score = 37.1 bits (82), Expect = 0.028
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = -1
Query: 779 TTSVKTASETVGMS--TQIWYRRIQKMPSTLLYNCLRHMKATLPSSL*AR*PT*LWPLKR 606
TT+ K ++ T S T+ R P T T PS+ P+ P
Sbjct: 539 TTTQKRSTTTHNTSPDTKTTIRSTTLSPKTTTTPSTTTPSTTTPSTTT---PSTTTPSTT 595
Query: 605 TPPFSADSHTSTSEPDTYIPKNTRQQSSTLTWMLKRTTS*PKT 477
TP + S T+T + T+ P+ T Q+++T + K+TT+ PKT
Sbjct: 596 TPSTTTPSTTTTVKVSTHRPRTTSQKTTTASTTTKKTTTSPKT 638
>AE014298-231|AAF45644.1| 1795|Drosophila melanogaster CG14796-PA
protein.
Length = 1795
Score = 37.1 bits (82), Expect = 0.028
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = -1
Query: 779 TTSVKTASETVGMS--TQIWYRRIQKMPSTLLYNCLRHMKATLPSSL*AR*PT*LWPLKR 606
TT+ K ++ T S T+ R P T T PS+ P+ P
Sbjct: 539 TTTQKRSTTTHNTSPDTKTTIRSTTLSPKTTTTPSTTTPSTTTPSTTT---PSTTTPSTT 595
Query: 605 TPPFSADSHTSTSEPDTYIPKNTRQQSSTLTWMLKRTTS*PKT 477
TP + S T+T + T+ P+ T Q+++T + K+TT+ PKT
Sbjct: 596 TPSTTTPSTTTTVKVSTHRPRTTSQKTTTASTTTKKTTTSPKT 638
>AE014297-4166|AAF56739.2| 458|Drosophila melanogaster CG12879-PA
protein.
Length = 458
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 379 VYCTENVYPPLPAKVTIFLHL*EGEY-CN 462
VYC EN Y P PAK++ + HL Y CN
Sbjct: 240 VYCLENFYAPDPAKISSYEHLGRQAYHCN 268
>AY061521-1|AAL29069.1| 350|Drosophila melanogaster LD47568p
protein.
Length = 350
Score = 30.7 bits (66), Expect = 2.4
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -3
Query: 471 PEKVTIFPF-SQVQ-KYCNFSREWRINVLGAINTEIIRAQNKYERISLPREDRWQALDPA 298
P K+ IFP S V Y F R++ I +GA+ I + E SL + W+ P
Sbjct: 50 PGKLKIFPQGSDVDINYLAFHRDFLI--VGAVGL-IYGLEWNEEEESLATKRSWEVKIPM 106
Query: 297 TVALFLRPDLVQEYKYSKNSIALCGENRGITSNSFVDKEDANVRIAYSVKTE 142
V PD+ + S+NSI G G+ V ED ++ Y T+
Sbjct: 107 QVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQ--VSLEDGRIQREYRGHTD 156
>AE014296-2112|AAF49944.1| 350|Drosophila melanogaster CG5632-PA
protein.
Length = 350
Score = 30.7 bits (66), Expect = 2.4
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -3
Query: 471 PEKVTIFPF-SQVQ-KYCNFSREWRINVLGAINTEIIRAQNKYERISLPREDRWQALDPA 298
P K+ IFP S V Y F R++ I +GA+ I + E SL + W+ P
Sbjct: 50 PGKLKIFPQGSDVDINYLAFHRDFLI--VGAVGL-IYGLEWNEEEESLATKRSWEVKIPM 106
Query: 297 TVALFLRPDLVQEYKYSKNSIALCGENRGITSNSFVDKEDANVRIAYSVKTE 142
V PD+ + S+NSI G G+ V ED ++ Y T+
Sbjct: 107 QVDAVEVPDVNSMWLDSENSILFAGCGDGVIYQ--VSLEDGRIQREYRGHTD 156
>AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-PA
protein.
Length = 1317
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 767 KTASETVGMSTQIWYRRIQKMPSTLLYNCLR 675
K S+T+ +S IW R P + LY C R
Sbjct: 498 KPVSKTLSISNSIWERFCDNKPKSTLYKCAR 528
>U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus
interruptus dominant proteinprotein.
Length = 1397
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 124 TGSLLERCLRIHLTIIQGIPTEARR*KRVEGYLNCNS 14
+ L +RC + I+GIP + + R++ Y+NC S
Sbjct: 387 SSQLSDRCYNNVVNNIKGIPGDVKVNSRLDEYINCGS 423
>AJ620303-1|CAF04330.1| 350|Drosophila melanogaster THO complex 6
protein.
Length = 350
Score = 28.7 bits (61), Expect = 9.8
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = -3
Query: 471 PEKVTIFPF-SQVQ-KYCNFSREWRINVLGAINTEIIRAQNKYERISLPREDRWQALDPA 298
P K+ IFP S V Y F R++ I +GA+ I + E SL + W+ P
Sbjct: 50 PGKLKIFPQGSDVDINYLAFHRDFLI--VGAVGL-IYGLEWNEEEESLATKRSWEVKIPM 106
Query: 297 TVALFLRPDLVQEYKYSKNSIALCGENRGITSNSFVDKEDANVRIAYSVKTE 142
V PD+ + S+NS G G+ V ED ++ Y T+
Sbjct: 107 QVDAVEVPDVNSMWLDSENSTLFAGCGDGVIYQ--VSLEDGRIQREYRGHTD 156
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,238,055
Number of Sequences: 53049
Number of extensions: 818469
Number of successful extensions: 2250
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2245
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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