Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a10
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical pr...    66   3e-11
AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical...    50   1e-06
Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC199169-5|ABO33251.1|  314|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical
           protein F13H8.3 protein.
          Length = 374

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
 Frame = -3

Query: 780 DYFGKDGLGDSGDVYPDLVPP-----HTENAVNALIQLSKTHEGNLTIITIGALTNLALA 616
           + FG DG+G   DV P  +P         NAV+A+I L+K+ + ++ ++ +G LTN+A+A
Sbjct: 102 ELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINLTKSTK-DIILVGLGPLTNIAMA 160

Query: 615 IKTDPAFLGRLAHVYIGAGHI----HTEEYPTAEFNAHMDVEAYHVV 487
           I+ DP    R+  V I  G+     +T+   TAEFN  MD EA H+V
Sbjct: 161 IRKDPDISKRVKQVVIMGGNYLGVGNTQFNSTAEFNFLMDPEAAHIV 207


>AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical
           protein Y43F8C.13 protein.
          Length = 338

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
 Frame = -3

Query: 798 KPPEITDYFGKDGLGDSGDVYPDLVPPHTE----NAVNALIQLSKTHEGNLTIITIGALT 631
           K   ++D+FG DG+GD  + +P +     E    +A  ALI + + +  + T++TIG LT
Sbjct: 79  KDDTVSDFFGIDGIGDKPEEFPKVERSDFEGEGKHASLALIDILRENR-DATLVTIGPLT 137

Query: 630 NLALAIKTDPAFLGRLAHVYIGAGHIH----TEEYPTAEFNAHMDVEAYHVVTENANPEK 463
           N+A+A++    F    + + I  G+ +     +   +AE+N H D EA  +V        
Sbjct: 138 NVAIALQLCEEFSTYPSRLVIMGGNYYAVGNVDGGSSAEYNFHGDPEAASIVLRRMKC-P 196

Query: 462 VTIFPF 445
           +TI P+
Sbjct: 197 ITIVPW 202


>Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical
           protein R90.1 protein.
          Length = 776

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = -1

Query: 260 STNIRRIASLYVEKTGASQVIRLSIKKTPMFASLTLSRLKNIDNFYWISSRTMPENSPND 81
           S +I+R+A L V+KT +++ I LSI       + T +++ + DN    ++  M ENS N+
Sbjct: 439 SLSIKRVAGLPVDKTRSNKSITLSINNRYKSGAKT-NKISSFDN----TNAQMDENSANN 493


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 297 TVALFLRPDLVQEYKYSKNSIALCGENRGITSNSFVDKEDANVRIAYSVKTEEYRQFL 124
           T+ L  RP+    +     +++LC  N     +S   K DAN   +++    + R FL
Sbjct: 30  TIVLVSRPNKAAPFDGRVITVSLCNSNSEPQISSLRFKRDANTDCSFNANKNQLRNFL 87


>AC199169-5|ABO33251.1|  314|Caenorhabditis elegans Hypothetical
           protein F38A1.11 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 200 IRLSIKKTPMFASLTLSRLKNIDNFYWISSRTMP 99
           I+L+ K+T  F +  ++  K+ D  YWI ++T P
Sbjct: 199 IKLNNKRTENFVTTEIATWKDSDIIYWIDNQTNP 232


>Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical
           protein K04G2.7 protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 516 HMDVEAYHVVTENANPEKVTIFPFSQVQKYCNFSREWRINVLGAINTEIIRAQNKYERIS 337
           H D +   ++    +  K+    F + ++    SR+   +V   +N EI+R QNK ER++
Sbjct: 92  HADKKDKTIILSALDVTKMKTTNFLKKRRILRTSRKEYADVDLQVNKEIVRRQNKGERLT 151

Query: 336 LP 331
            P
Sbjct: 152 NP 153


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical protein
            R06C7.8 protein.
          Length = 987

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 359  KTNTRGSRCQEKIDGRLWTQRLSRCFLGRI*FKSTNIRRIASLYVEKTGAS 207
            +  T    C E +DGR WT +    + G   F +T    +A  Y + TGAS
Sbjct: 865  RAGTEAFDCPEMVDGRSWTYQAD--YFG---FAATMAVVVAGKYAQLTGAS 910


>U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical
           protein M60.6 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -3

Query: 732 DLVPPHTENAVNAL-IQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGH 556
           D  PPH  NA+ ++ +QLS   EG L+  T   + +L  A+     FLG +  V  G   
Sbjct: 8   DSSPPH--NALTSIRLQLSHLKEGRLSETTTVKMLSLLKALANVHVFLGIIMIVLSGLAD 65

Query: 555 IHTEEYPTAEFNAHMDVEAYHVV 487
             +    T   +   ++ +++ V
Sbjct: 66  YASTRINTIRLHGLEEICSFYFV 88


>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 207 TSNSFVDKEDAN--VRIAYSVKTEEYRQFLLDLFSND 103
           +S+S  D+EDA   + +AYS   E+++   ++LF  D
Sbjct: 526 SSSSEDDEEDAGSLISVAYSTDNEDFKSCKIELFQED 562


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 207 TSNSFVDKEDAN--VRIAYSVKTEEYRQFLLDLFSND 103
           +S+S  D+EDA   + +AYS   E+++   ++LF  D
Sbjct: 526 SSSSEDDEEDAGSLISVAYSTDNEDFKSCKIELFQED 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,160
Number of Sequences: 27780
Number of extensions: 420513
Number of successful extensions: 1093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)