Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a10
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 445 EGEYCNFL----WIRVFGHDVVRFNIHVSVELCCRVFFGMY 555
           EG + N +    +IR+F +  V ++I +S+ L C +   +Y
Sbjct: 127 EGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLY 167


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 445 EGEYCNFL----WIRVFGHDVVRFNIHVSVELCCRVFFGMY 555
           EG + N +    +IR+F +  V ++I +S+ L C +   +Y
Sbjct: 127 EGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLY 167


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 621 LAIKTDPAFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFS 442
           +A+ ++    G +  V++G  H H     +   N H+ VE    + +N +  + TI   S
Sbjct: 522 IAVHSEQNVPGAVVRVFLGPKHDHQGRPISISKNQHLFVELDQFI-QNLHAGENTIIRNS 580

Query: 441 Q 439
           Q
Sbjct: 581 Q 581


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 161 LTLSRLKNIDNFYWISSRTMPENSPNDNTRNT 66
           L L+  + I   Y  S   +  N PNDN RNT
Sbjct: 10  LALANGEEIKTIY--SWNVIEYNFPNDNIRNT 39


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 661 PYHHHYRRANQLSFGH*NGP 602
           P+HHH+ +   L   H   P
Sbjct: 350 PHHHHHHQTQSLQHLHYRQP 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,917
Number of Sequences: 438
Number of extensions: 5032
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)