Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a09
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 581 VVTVMLSLIWFIITKIRLYIFYRIFLFRSKTFVSYKDSFTSLLYCRYKIIT 733
           V+T+ML ++++ +     + FYR+F          K  F S +  RY + T
Sbjct: 167 VITLMLCMMFWTLYSTWQFAFYRVFWLPDNANEICKSMFESFITPRYVLAT 217


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 364 LLIFVMLRVMLLKNLSPGSLKSFYVQFTRRGVIFCSILF 248
           L  F  LR  LLKN +   +K FY+ F  +  I C +LF
Sbjct: 138 LRFFFPLRFSLLKNSTDRYVKQFYIFFVSK-EIACFLLF 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,650
Number of Sequences: 27780
Number of extensions: 334187
Number of successful extensions: 702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)