Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a09
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.2  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 784 YNTNNIETDYIEKQNNYITNY 846
           YN NN   +Y    NN   NY
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNY 349


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 641 FYRIFLFRSKTFVSYKDSFTSLLYCRYKIITV 736
           FY   ++ +      ++ F+SL Y +YK + V
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 641 FYRIFLFRSKTFVSYKDSFTSLLYCRYKIITV 736
           FY   ++ +      ++ F+SL Y +YK + V
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNV 328


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 787 NTNNIETDYIEKQNNYITNY 846
           N  N   +Y    NNY TNY
Sbjct: 90  NNYNYNNNYNNYNNNYNTNY 109


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 709 ILSLQNNNCMCLKNFHQQ**RKIIKYNTNNIE 804
           I+S  +N+C    N++     K + YN N IE
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNINYIE 334


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 179 LNFKSQWRQRRFQFN 135
           L F+ QW   R +FN
Sbjct: 84  LTFREQWLDERLRFN 98


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 179 LNFKSQWRQRRFQFN 135
           L F+ QW   R +FN
Sbjct: 84  LTFREQWLDERLRFN 98


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 NEPGDRFFNSITLSITKINN*H 371
           NEP  R FN  +L +TK+   H
Sbjct: 355 NEPEIRVFNDGSLYLTKVQLIH 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,029
Number of Sequences: 438
Number of extensions: 4741
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)