Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a05
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.61
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 1.1
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 28 1.9
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 28 1.9
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.5
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 2.5
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 3.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.3
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 5.7
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 5.7
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 26 5.7
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.5
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 9.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 9.9
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 9.9
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.61
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 618 GRKEKTEFKRRIVPHSC 568
G++EK EF + +VPHSC
Sbjct: 262 GKQEKPEFVKNLVPHSC 278
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 216 YNHHVIYKYSYQLRLSF*WDQSH 284
Y +H Y+Y Y +R SF W+ S+
Sbjct: 269 YPYHEAYEYYYYIRSSFSWEDSY 291
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 742 PPEYSGPIITDFLSWLNPYDALPCNKDGI 656
PP + T L W+N YD P DG+
Sbjct: 171 PPSSPYTLSTGILDWVNAYDPQPIADDGL 199
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 537 YYLLLYYLPNSTNVEQYGV*IPFFLFFLGVSVNESLGPNKIPSLLQGRAS*GFNQLRKSV 716
++LLL L NS E++ + F FF+ + GP+ + + S F QL S+
Sbjct: 764 FFLLLSRLKNS-RTERFVLRCTIFFFFVASEQTGTCGPDNLIQGVDAVQSGVFGQLMTSI 822
Query: 717 II 722
I+
Sbjct: 823 IL 824
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 489 IEKSVGN---KRCYIDPSDWERETASILRSTISV 397
+E+S+G+ R DP +W+RET IL SV
Sbjct: 720 MERSMGSAPDSRVAFDPDEWQRETLDILDRDESV 753
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 420 ILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDL 304
++ STI Q+ KTETA T + N K +S++D+
Sbjct: 11 LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDI 50
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 387 QANKTETALTFR---QTKSRLNAKTRSSLDLYNLRSSDDSDPIKN 262
QA ALTF +K LN+K LD+++ R + D +P+++
Sbjct: 261 QATDAGVALTFSFPPPSKDVLNSKIELGLDMWDERFATDMEPLQS 305
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 799 PVAPREPAGDTIPDADLPVPPEYSGPIITDFLSWLNP 689
P AP+ PA +P+A VP + P++ + LS P
Sbjct: 542 PSAPQRPAAPVVPEAP-SVPQRPAVPVVPEALSVPQP 577
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 751 LPVPPEYSGPIITDFLSWL--NPYDALPCNKDGILLGPKDSLTDTPRKKRKNGI*TPYCS 578
+PVP ++D L+ + N Y+ +D ++ K+ P +KN + P+C+
Sbjct: 586 IPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVKEWADFVPALNKKNIVMIPWCN 645
Query: 577 T 575
T
Sbjct: 646 T 646
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 368 VSVLFACLFCTDIVDLRILAVSRSQSDGSM*QRLF 472
VS+LFAC D+ L IL+ ++ +M RLF
Sbjct: 246 VSILFACQLVLDLALLLILSWGYTRYSTNMRDRLF 280
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 432 LVPNQMGLCNSVCFQQIFRFSASQFVLLILSDICR 536
LV NQ+ +V Q F F S FVL++ S++ R
Sbjct: 77 LVENQIHSSKTVSGQSYFPFIWSLFVLILFSNLLR 111
>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 320 LVFALSLDLV*RKVKAVSVLFACLFCTDI 406
L+F ++LD ++ SVLF C FC DI
Sbjct: 89 LLFWINLDSADSRI---SVLFQCFFCIDI 114
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 9.9
Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = -2
Query: 489 IEKSVGNKRCYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSL 310
+EK + R ++ E A +SV N+Q ++ ++ ++NA+ R +
Sbjct: 184 LEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEKINAEQRLQI 243
Query: 309 -DLYNLRSSDDSDPIKNLSAIGTNICKLRDDCKNVKS 202
+L L+++ + + I+ LS+ N+ L+++ +++S
Sbjct: 244 SELEKLKAAQE-ERIEKLSSNNRNVEILKEEKNDLES 279
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 747 GRSASGMVSPAGSRGATGVILLVSCFF 827
G+S V S GA G++ CFF
Sbjct: 49 GQSCDSPVKSLASHGAVGIVTACFCFF 75
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 610 FSSSVCPSMNLWDLIKYHPY 669
FSSS+ S+ WDLI+Y +
Sbjct: 397 FSSSLDGSVRAWDLIRYRNF 416
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 546 INNNGKYRTESARRIEKPKIEKSVGNK 466
+NN G Y+ ++KP K +GNK
Sbjct: 62 VNNLGFYKVSKDPTLDKPNPAKRLGNK 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,265
Number of Sequences: 5004
Number of extensions: 73946
Number of successful extensions: 240
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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