Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a05
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520...    31   1.5  
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    30   2.0  
09_06_0083 + 20753191-20754480                                         29   3.4  
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182...    29   6.0  
07_03_1341 + 25890716-25890937,25890994-25891101                       28   7.9  

>04_04_0383 -
           24851496-24851681,24851785-24851882,24851964-24852063,
           24852741-24852899
          Length = 180

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 LHFYNHHVIYKYSYQL 254
           LHFY++HV+Y +SY++
Sbjct: 61  LHFYDYHVVYSFSYKV 76


>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
            26954069-26954240,26954494-26954567,26954667-26954763,
            26954888-26955000,26955168-26955283,26955960-26956017,
            26956512-26956664,26957377-26957460,26957579-26957734,
            26958401-26958469,26959212-26959300,26959398-26959560,
            26959740-26959874,26959950-26960055,26960143-26960237,
            26960508-26960753,26961567-26961635,26961772-26961837,
            26961838-26961983,26962348-26962449,26962752-26962899,
            26964183-26964239,26964315-26964445,26964535-26964623,
            26964694-26965007,26965084-26965176,26966504-26966578,
            26966834-26966895,26967254-26967356,26967518-26967676,
            26967790-26967930,26967981-26968084,26968146-26968260,
            26969017-26969169,26969256-26969417
          Length = 1646

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
 Frame = -2

Query: 570  CCLEDNTTINNNGKYRTESARRIEKPKIEKSV--GNKRCYIDPSDWERETASILRSTISV 397
            CCL  N  ++ + +  T +A   E P+I++ V  G+ + + D  +     +S  R   S+
Sbjct: 677  CCLLMNGLVHESSEDATMNAMNDELPRIQEQVYYGHIQSHTDVLEKFLSESSYKRYNPSI 736

Query: 396  QNKQA-NKTETALT--FRQTKSRLNAKTRSSLDLYNLRSSDDSDPIKNLSAI 250
              K   NK   +L   + Q  S L+  T     L++  ++DD+ P+ +L A+
Sbjct: 737  TGKSTENKRFVSLVVPYHQGDSTLHDITY----LHSHGTTDDAKPVTHLVAV 784


>09_06_0083 + 20753191-20754480
          Length = 429

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 799 PVAPREPAGDTIPDAD-LPVPPEYSGPIITDF-LSWLNPYDALPCNKD 662
           P +P +P  DT+PD   LP PP  + P   D  L    P D  P + D
Sbjct: 228 PASPDQPPVDTMPDQPLLPPPPADATPATPDLPLPPPPPADTYPVSPD 275


>03_06_0462 +
           34113877-34114463,34117294-34117466,34118049-34118233,
           34118865-34118957
          Length = 345

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -2

Query: 417 LRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDDSDPIK----NLSAI 250
           LR  ++    +A KTE+     +T  R   K R++++      +D+ +  K    N+ A+
Sbjct: 164 LRGQLARFQAEAGKTESVRAQVETMRREIQKGRAAVEFEKKAHADNLEQSKAMEKNMIAV 223

Query: 249 GTNICKLRDDCKNVKSISFSKSCTS 175
            + I KLR D  N +  + + + T+
Sbjct: 224 ASEIEKLRGDLANAEKRATAVTATA 248


>07_03_1341 + 25890716-25890937,25890994-25891101
          Length = 109

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 474 GNKRCYIDPSDWERETASILRS-TISVQNKQANKTETALTFRQTKSRLNAKTRSS 313
           GN    + P +  R  +S L S TIS+    A +    L   Q + R+NA+ +SS
Sbjct: 10  GNDAIGLTPGELNRFNSSFLSSDTISISQSYAIRLAIYLQRIQQRGRMNAEEKSS 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,437
Number of Sequences: 37544
Number of extensions: 417074
Number of successful extensions: 1223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)