Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a05
(829 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 31 5.1
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 31 5.1
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 31 5.1
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating... 31 6.7
BC018090-1|AAH18090.2| 383|Homo sapiens ZNF641 protein protein. 31 6.7
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein. 31 6.7
D14828-1|BAA03569.1| 523|Homo sapiens Tax helper protein 2 prot... 30 8.9
D14827-1|BAA03568.1| 506|Homo sapiens Tax helper protein 1 prot... 30 8.9
DQ086814-1|AAY87165.1| 1586|Homo sapiens GLI-Kruppel transcripti... 30 8.9
BC111410-1|AAI11411.1| 725|Homo sapiens GLI2 protein protein. 30 8.9
AB209354-1|BAD92591.1| 1121|Homo sapiens GLI-Kruppel family memb... 30 8.9
AB007298-1|BAA25668.1| 812|Homo sapiens hGLI2 protein. 30 8.9
AB007297-1|BAA25667.1| 829|Homo sapiens hGLI2 protein. 30 8.9
AB007296-1|BAA25666.1| 1241|Homo sapiens hGLI2 protein. 30 8.9
AB007295-1|BAA25665.1| 1258|Homo sapiens hGLI2 protein. 30 8.9
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 31.1 bits (67), Expect = 5.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 717 IIGPEYSGGTGRSASGMVSPAGSRGATGV 803
++GP +G G G V PAG RGATGV
Sbjct: 1544 VVGPAVAGPKGEK--GDVGPAGPRGATGV 1570
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 31.1 bits (67), Expect = 5.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 717 IIGPEYSGGTGRSASGMVSPAGSRGATGV 803
++GP +G G G V PAG RGATGV
Sbjct: 1544 VVGPAVAGPKGEK--GDVGPAGPRGATGV 1570
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 31.1 bits (67), Expect = 5.1
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 717 IIGPEYSGGTGRSASGMVSPAGSRGATGV 803
++GP +G G G V PAG RGATGV
Sbjct: 183 VVGPAVAGPKGEK--GDVGPAGPRGATGV 209
>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
factor protein.
Length = 1404
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/67 (26%), Positives = 25/67 (37%)
Frame = -1
Query: 814 TRSITPVAPREPAGDTIPDADLPVPPEYSGPIITDFLSWLNPYDALPCNKDGILLGPKDS 635
T P P+EPA T P P P+ P + P + P K+ PK+
Sbjct: 424 TTKSAPTTPKEPA-PTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEP 482
Query: 634 LTDTPRK 614
P+K
Sbjct: 483 APTAPKK 489
>BC018090-1|AAH18090.2| 383|Homo sapiens ZNF641 protein protein.
Length = 383
Score = 30.7 bits (66), Expect = 6.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = -1
Query: 784 EPAGDTIPDADLPVPPEYSGPIITDFLSWLNP-----YDALPCNKDGILLGP 644
E GDT P+ + PP + D + W NP +D++PC+ G+LLGP
Sbjct: 178 EHEGDT-PELEAE-PPRMLSSVSEDTVLW-NPEHDESWDSMPCSSRGMLLGP 226
>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
Length = 1404
Score = 30.7 bits (66), Expect = 6.7
Identities = 18/67 (26%), Positives = 25/67 (37%)
Frame = -1
Query: 814 TRSITPVAPREPAGDTIPDADLPVPPEYSGPIITDFLSWLNPYDALPCNKDGILLGPKDS 635
T P P+EPA T P P P+ P + P + P K+ PK+
Sbjct: 424 TTKSAPTTPKEPA-PTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEP 482
Query: 634 LTDTPRK 614
P+K
Sbjct: 483 APTAPKK 489
>D14828-1|BAA03569.1| 523|Homo sapiens Tax helper protein 2
protein.
Length = 523
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 193 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 245
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 246 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 273
>D14827-1|BAA03568.1| 506|Homo sapiens Tax helper protein 1
protein.
Length = 506
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 176 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 228
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 229 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 256
>DQ086814-1|AAY87165.1| 1586|Homo sapiens GLI-Kruppel transcription
factor GLI2 protein.
Length = 1586
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 521 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 573
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 574 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 601
>BC111410-1|AAI11411.1| 725|Homo sapiens GLI2 protein protein.
Length = 725
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 504 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 556
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 557 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 584
>AB209354-1|BAD92591.1| 1121|Homo sapiens GLI-Kruppel family member
GLI2 isoform beta variant protein.
Length = 1121
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 56 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 108
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 109 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 136
>AB007298-1|BAA25668.1| 812|Homo sapiens hGLI2 protein.
Length = 812
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 176 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 228
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 229 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 256
>AB007297-1|BAA25667.1| 829|Homo sapiens hGLI2 protein.
Length = 829
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 193 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 245
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 246 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 273
>AB007296-1|BAA25666.1| 1241|Homo sapiens hGLI2 protein.
Length = 1241
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 176 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 228
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 229 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 256
>AB007295-1|BAA25665.1| 1258|Homo sapiens hGLI2 protein.
Length = 1258
Score = 30.3 bits (65), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K + H C + + ++ K++ + EKP I K G +
Sbjct: 193 KTHLRSHTGEKPY------VCEHEGCNKAFSNASDRAKHQNRTHSN-EKPYICKIPGCTK 245
Query: 462 CYIDPSDWERETASILRSTISVQNKQAN 379
Y DPS + ++ V KQ N
Sbjct: 246 RYTDPSSLRKHVKTVHGPDAHVTKKQRN 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,410,598
Number of Sequences: 237096
Number of extensions: 2320022
Number of successful extensions: 10156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10154
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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