Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a05
(829 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein ( Dros... 35 0.12
U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interr... 35 0.12
AY573706-1|AAS87249.1| 250|Drosophila melanogaster cubitus inte... 35 0.12
AF433680-1|AAM17953.1| 249|Drosophila melanogaster cubitus inte... 35 0.12
AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA pr... 35 0.12
BT024198-1|ABC86260.1| 857|Drosophila melanogaster RE55588p pro... 32 0.83
BT010070-1|AAQ22539.1| 1038|Drosophila melanogaster LD13052p pro... 31 1.5
AY069605-1|AAL39750.1| 384|Drosophila melanogaster LD36528p pro... 31 2.5
AE013599-1612|AAF58441.1| 384|Drosophila melanogaster CG3850-PA... 31 2.5
AE014298-1590|AAF48025.3| 1028|Drosophila melanogaster CG11759-P... 29 5.9
AY061324-1|AAL28872.1| 456|Drosophila melanogaster LD23965p pro... 29 7.8
AF197345-1|AAF07212.1| 1013|Drosophila melanogaster prominin-lik... 29 7.8
AF127935-1|AAD22487.2| 1013|Drosophila melanogaster prominin-lik... 29 7.8
AE014297-2408|AAF55467.1| 1493|Drosophila melanogaster CG14318-P... 29 7.8
AE014296-563|AAN11531.1| 1013|Drosophila melanogaster CG7740-PC,... 29 7.8
AE014296-562|AAN11530.1| 1013|Drosophila melanogaster CG7740-PB,... 29 7.8
AE014296-561|AAF47716.2| 1013|Drosophila melanogaster CG7740-PA,... 29 7.8
>X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein (
Drosophila ciD (cubitusinterruptus Dominant) locus mRNA.
).
Length = 1377
Score = 35.1 bits (77), Expect = 0.12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K T + C + + ++ K++ + EKP I K+ G +
Sbjct: 535 KTHLRSHTGEKPYT------CEYPGCSKAFSNASDRAKHQNRTHSN-EKPYICKAPGCTK 587
Query: 462 CYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSS 286
Y DPS + T+ ANK L SRL +R +L +N+ SS
Sbjct: 588 RYTDPSSLRKHV-----KTVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSS 642
Query: 285 DDSDPIKNLSAIGTNICKLRDD 220
S+ +GT+ ++ +
Sbjct: 643 PCSEDSHLGKMLGTSSPSIKSE 664
>U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus
interruptus dominant proteinprotein.
Length = 1397
Score = 35.1 bits (77), Expect = 0.12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K T + C + + ++ K++ + EKP I K+ G +
Sbjct: 535 KTHLRSHTGEKPYT------CEYPGCSKAFSNASDRAKHQNRTHSN-EKPYICKAPGCTK 587
Query: 462 CYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSS 286
Y DPS + T+ ANK L SRL +R +L +N+ SS
Sbjct: 588 RYTDPSSLRKHV-----KTVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSS 642
Query: 285 DDSDPIKNLSAIGTNICKLRDD 220
S+ +GT+ ++ +
Sbjct: 643 PCSEDSHLGKMLGTSSPSIKSE 664
>AY573706-1|AAS87249.1| 250|Drosophila melanogaster cubitus
interruptus protein.
Length = 250
Score = 35.1 bits (77), Expect = 0.12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K T + C + + ++ K++ + EKP I K+ G +
Sbjct: 15 KTHLRSHTGEKPYT------CEYPGCSKAFSNASDRAKHQNRTHSN-EKPYICKAPGCTK 67
Query: 462 CYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSS 286
Y DPS + T+ ANK L SRL +R +L +N+ SS
Sbjct: 68 RYTDPSSLRKHV-----KTVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSS 122
Query: 285 DDSDPIKNLSAIGTNICKLRDD 220
S+ +GT+ ++ +
Sbjct: 123 PCSEDSHLGKMLGTSSPSIKSE 144
>AF433680-1|AAM17953.1| 249|Drosophila melanogaster cubitus
interrptus protein.
Length = 249
Score = 35.1 bits (77), Expect = 0.12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K T + C + + ++ K++ + EKP I K+ G +
Sbjct: 15 KTHLRSHTGEKPYT------CEYPGCSKAFSNASDRAKHQNRTHSN-EKPYICKAPGCTK 67
Query: 462 CYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSS 286
Y DPS + T+ ANK L SRL +R +L +N+ SS
Sbjct: 68 RYTDPSSLRKHV-----KTVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSS 122
Query: 285 DDSDPIKNLSAIGTNICKLRDD 220
S+ +GT+ ++ +
Sbjct: 123 PCSEDSHLGKMLGTSSPSIKSE 144
>AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA
protein.
Length = 1397
Score = 35.1 bits (77), Expect = 0.12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKR 463
K H R+H G K T + C + + ++ K++ + EKP I K+ G +
Sbjct: 535 KTHLRSHTGEKPYT------CEYPGCSKAFSNASDRAKHQNRTHSN-EKPYICKAPGCTK 587
Query: 462 CYIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSS 286
Y DPS + T+ ANK L SRL +R +L +N+ SS
Sbjct: 588 RYTDPSSLRKHV-----KTVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSS 642
Query: 285 DDSDPIKNLSAIGTNICKLRDD 220
S+ +GT+ ++ +
Sbjct: 643 PCSEDSHLGKMLGTSSPSIKSE 664
>BT024198-1|ABC86260.1| 857|Drosophila melanogaster RE55588p
protein.
Length = 857
Score = 32.3 bits (70), Expect = 0.83
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Frame = -2
Query: 579 PHSCCLEDNTTINNNGKYRTESARRI---EKPKIEKSVGNKRCYIDPSDWERETASILRS 409
P++C + +N R + R EKP I K+ G + Y DPS +
Sbjct: 6 PYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHV-----K 60
Query: 408 TISVQNKQANKTETALTFRQTKSRLNA-KTRSSLDLYNLRSSDDSDPIKNLSAIGTNICK 232
T+ ANK L SRL +R +L +N+ SS S+ +GT+
Sbjct: 61 TVHGAEFYANKKHKGLPLNDANSRLQQNNSRHNLQEHNIDSSPCSEDSHLGKMLGTSSPS 120
Query: 231 LRDD 220
++ +
Sbjct: 121 IKSE 124
>BT010070-1|AAQ22539.1| 1038|Drosophila melanogaster LD13052p
protein.
Length = 1038
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -2
Query: 456 IDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDDS 277
+D D+E +R+ + V+ KQ N + T + + +K +LN T LD+ N +
Sbjct: 356 MDVIDYELRRYETMRNELDVR-KQPNGSSTPHSAKASKEKLNRSTDDFLDIMNEEKPKEM 414
Query: 276 DP 271
+P
Sbjct: 415 EP 416
>AY069605-1|AAL39750.1| 384|Drosophila melanogaster LD36528p
protein.
Length = 384
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLE--DNTTINNNGKYRTESARRIEKPKIEKSVGN 469
KIH R+H G K P+ C E N++ +++ +EKP + K G
Sbjct: 212 KIHIRSHSGEK----------PYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGC 261
Query: 468 KRCYIDPSDWERETASILRS 409
++ Y DPS + + S
Sbjct: 262 QKRYTDPSSLRKHVKTFKHS 281
>AE013599-1612|AAF58441.1| 384|Drosophila melanogaster CG3850-PA
protein.
Length = 384
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 642 KIH*RTHRGRKEKTEFKRRIVPHSCCLE--DNTTINNNGKYRTESARRIEKPKIEKSVGN 469
KIH R+H G K P+ C E N++ +++ +EKP + K G
Sbjct: 212 KIHIRSHSGEK----------PYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGC 261
Query: 468 KRCYIDPSDWERETASILRS 409
++ Y DPS + + S
Sbjct: 262 QKRYTDPSSLRKHVKTFKHS 281
>AE014298-1590|AAF48025.3| 1028|Drosophila melanogaster CG11759-PA
protein.
Length = 1028
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 456 IDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYN 298
+D D+E +R+ + V+ KQ N + T + + +K +LN T LD+ N
Sbjct: 356 MDVIDYELRRYETMRNELDVR-KQPNGSSTPHSAKASKEKLNRSTDDFLDIMN 407
>AY061324-1|AAL28872.1| 456|Drosophila melanogaster LD23965p
protein.
Length = 456
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 35 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 94
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 95 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 134
>AF197345-1|AAF07212.1| 1013|Drosophila melanogaster prominin-like
protein protein.
Length = 1013
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 592 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 651
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 652 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 691
>AF127935-1|AAD22487.2| 1013|Drosophila melanogaster prominin-like
protein protein.
Length = 1013
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 592 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 651
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 652 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 691
>AE014297-2408|AAF55467.1| 1493|Drosophila melanogaster CG14318-PA
protein.
Length = 1493
Score = 29.1 bits (62), Expect = 7.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -2
Query: 501 EKPKIEKSVGNKRCYIDPSDWERETASILRS---TISVQNKQANKTET 367
++ ++KS K YID +DW+ T + R ISV N A K E+
Sbjct: 1069 QRRHLDKSTKRKGMYIDNADWQAPTEAPQRGLALDISVANLNAIKPES 1116
>AE014296-563|AAN11531.1| 1013|Drosophila melanogaster CG7740-PC,
isoform C protein.
Length = 1013
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 592 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 651
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 652 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 691
>AE014296-562|AAN11530.1| 1013|Drosophila melanogaster CG7740-PB,
isoform B protein.
Length = 1013
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 592 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 651
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 652 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 691
>AE014296-561|AAF47716.2| 1013|Drosophila melanogaster CG7740-PA,
isoform A protein.
Length = 1013
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 459 YIDPSDWERETASILRSTISVQNKQANKTETALTFRQTKSRLNAKTRSSLDLYNLRSSDD 280
Y+ PS+ +E L+ + +++ AN+T + + +N TR + ++ ++D
Sbjct: 592 YLPPSESNKEVVQPLKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDS 651
Query: 279 SDPI-KNLSAIGTNICKLRDDCKNVKSISFSKSCTSIYAP 163
++LS + + RD+ K +K +S+Y P
Sbjct: 652 IKVFDEDLSTVVLLTKEERDELKTAGESKLAKYHSSLYMP 691
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,847,087
Number of Sequences: 53049
Number of extensions: 741832
Number of successful extensions: 3037
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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