Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a05
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    32   0.44 
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    30   1.8  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 579 PHSCCL---EDNTTINNNGKYRTESARRIEKPKIEK 481
           PH CCL    D+ T+N+NGKY+  +A+ I K   +K
Sbjct: 308 PHHCCLFKYVDDVTMNDNGKYQ-RNAKEIHKRICDK 342


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 579 PHSCCL---EDNTTINNNGKYRTESARRIEKPKIEK 481
           PH CCL    D+ T+N+NGKY+  +A+ I K   +K
Sbjct: 308 PHHCCLFKYVDDVTMNDNGKYQ-RNAKEIHKRICDK 342


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 6 protein.
          Length = 1254

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/95 (23%), Positives = 34/95 (35%)
 Frame = -2

Query: 612  KEKTEFKRRIVPHSCCLEDNTTINNNGKYRTESARRIEKPKIEKSVGNKRCYIDPSDWER 433
            KEK      I       ++ TT       +T S    EKP   +S   +    +PS  E 
Sbjct: 803  KEKVVQTTPITTEKSTTQEETTTTTTTTEKTTSKTTTEKPTTSESATTETTTSEPSTTES 862

Query: 432  ETASILRSTISVQNKQANKTETALTFRQTKSRLNA 328
             T     +T    +  A  T T+    +T +  +A
Sbjct: 863  TTVDTSSATTEESSTAAETTTTSAETSETTTSESA 897


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical protein
            T21C9.6 protein.
          Length = 1215

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 606  KTEFKRRIVPHSCCLEDNTTINN--NGKYRTESARRIEKPKIEKSVGNKRCYIDPSDWER 433
            KT  +  I    C  ED+  +    NGK  ++  RR  +  +    G K  Y+D + WE 
Sbjct: 891  KTIREESIDKEFCAAEDDEALKTLENGKKSSDELRRFLE--LHGHRGPKELYLDATTWEE 948

Query: 432  ETASILRSTI 403
            +T ++L  TI
Sbjct: 949  DT-NLLVHTI 957


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 784 EPAGDTIPDA-DLPVPPEYSGPIITDFLSWLNPYDALPCN 668
           +P G  +P+  D  +PP +  PI+TDF+   N     PCN
Sbjct: 47  KPTGAVLPEKRDGEMPPNFQCPILTDFVMLKNS----PCN 82


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 535 VIIYCCIIFQTARMWNNTAFKFRFFFSSSVCPSMN-LWDLIKYHPY 669
           +  + CI F   R+W N  F+F  F  + + P +  L   I   PY
Sbjct: 245 IYYFGCIFFILGRIWINPIFEFSIFVPTVIVPVLTPLSAFIHVAPY 290


>Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical
           protein K01A6.5 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 623 TEEEKKKRNLNAVLFHIRAVWKIIQQ*IITANIGQNQQDELRSRKSKNL 477
           TE    K  +    FHI   W+++ Q I   N  +N +D+     +K L
Sbjct: 65  TESSPVKNQIPRECFHIFVYWRVLYQRIKLENAQKNFRDDAFKEMAKRL 113


>AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical
           protein F16B4.4 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 711 SVIIGPEYSGGTGRSASGMVSPAGSRGATG 800
           + ++   Y GG GR A G   P+G  GA G
Sbjct: 11  AAVVVNAYPGGYGRPAGGYGPPSGGYGAPG 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,608
Number of Sequences: 27780
Number of extensions: 403299
Number of successful extensions: 1358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)