Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a04
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    31   0.18 
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    29   0.97 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.0  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.1  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 259 RRHKSWSGFDWICNLFSSQGRLPCSSSPADSRASH*GSSLRNIGDRSACRPRISCTRV*H 438
           R ++S SGF   C LF  +  + C S   + R     SS   I   SA   R+ CT   H
Sbjct: 36  RNYESHSGFSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGH 95

Query: 439 HNR-AQMRTAHG 471
           +   +Q++ A G
Sbjct: 96  YRGISQVKWATG 107


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 433 KHEYTKSWDDTQTYLQCCGVKS----PNDWHGNLPESCCREAYPGKRIDCKSN 287
           K ++T+++ D Q Y+    +      PN W    PE C  EA   K ++ + +
Sbjct: 299 KVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEARKS 351


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 72  IESYSQ---SIL*ELS*NLR-ICHSIFTNNPQESIKASNIIIATMMAAVPTYTASSRRNS 239
           IES +Q    ++ ELS NL  +  SIF  NP+ + + +  +      +  T     R NS
Sbjct: 133 IESTAQPFFDLVLELSTNLPYLIPSIFVENPKSNEEENTTLAFGSYLSTETSIIQQRVNS 192

Query: 240 MTLSRQP 260
           + +S QP
Sbjct: 193 LAISTQP 199


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 16  RYISRCVINYTKQTITIITSNHTVNQFCRSCHEIFESVILSSRIIHRRVLKPATL 180
           R +S  + +Y+ + +T + + +  NQ C    EIF+   L S+I+  R  KP+ +
Sbjct: 160 RLLSEEIFDYSAEQMTQLKTKNLKNQMCGEFAEIFQ---LCSQIL-ERAQKPSLI 210


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 81 MIRCNYCYCLLCVINNAPRNISSVFF 4
          ++RC Y Y  + +++NAP   S  FF
Sbjct: 22 LMRCCYMYDTVSLVSNAPNIYSIPFF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,453
Number of Sequences: 5004
Number of extensions: 61346
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)