Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a04
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    29   3.1  
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095...    29   3.1  
10_01_0129 + 1535823-1537196                                           28   9.5  
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416     28   9.5  

>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 PVPVIRALHSATLEIGLRVVPGFRVLVFDTIIGHR 454
           PVP IR   +A +E+G   VPG  +L F     HR
Sbjct: 407 PVPAIRRRTAAAVEMGGVTVPGGTMLTFPIATMHR 441


>06_03_0508 -
           21607706-21608863,21608943-21609090,21609411-21609523,
           21609612-21609705,21609841-21609950,21610093-21610257,
           21611660-21611800
          Length = 642

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 436 VKHEYTKSWDDTQTYLQCCGVKSPNDWHGNLPESCCREAY 317
           +KHEY+ +WDD    +Q C   +      + P+    EAY
Sbjct: 209 IKHEYS-AWDDKNPTVQTCNANNKITPGSHTPQDVVPEAY 247


>10_01_0129 + 1535823-1537196
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 78  IRCNYCYCLLCVINNAPRNI 19
           + C  CYC+L V +N PR I
Sbjct: 251 VYCPICYCVLAVGSNKPRQI 270


>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
          Length = 98

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 620 DHYGDSHGHDHADRRYEHVV 679
           +H+G  HGH HAD    HVV
Sbjct: 79  EHHG--HGHGHADEHQSHVV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,264
Number of Sequences: 37544
Number of extensions: 419811
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)