Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a04
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    35   0.004
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    36   0.042
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   2.1  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   2.8  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   2.8  
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   4.8  
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    29   4.8  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    29   4.8  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    28   6.4  
U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin fam...    28   8.5  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 2/176 (1%)
 Frame = -1

Query: 619 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXLQFVFREKVLTTLDRELYASVPYY 440
           L  LGCCGA +E  C+ +++                + +   +     +  +L   +  Y
Sbjct: 66  LGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRY 125

Query: 439 GVKHEYTKSWDDTQTYLQCCGVKSPNDW--HGNLPESCCREAYPGKRIDCKSNQNPTTIY 266
                   +WD T    +CCGV + +DW     +P+SCC E   G    C     P  ++
Sbjct: 126 HESRGVESAWDKTHQLFECCGVTNSSDWLTFTTIPDSCCIEEIEG----CARENAP--LF 179

Query: 265 VDGCLDKVIEFLREDAVYVGTXXXXXXXXXXXXXXLSCGLFVKIE*QIRRFHDSSY 98
             GC+  V +++ ++   VG                +C L   I   ++ FHD  Y
Sbjct: 180 EPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSKSI---LKDFHDFYY 232


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
 Frame = -1

Query: 457 ASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWH------GNL--PESCCR----EAYP 314
           A V   G + + + +WD  Q  LQCCGV +  DWH       NL  P+SCC     +A  
Sbjct: 122 AVVTKIGREIKLSLTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAEN 181

Query: 313 GKRIDCKSNQNPTTIYVDGCLDKVIEFLREDAVYV 209
           G     K     + +Y  GC  K  ++L    + V
Sbjct: 182 GTENCGKLPDEQSLLYQKGCFPKFSDWLYHHIILV 216


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 35.1 bits (77), Expect(2) = 0.004
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -1

Query: 607 GCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXLQFVFREKVLTTLDRELYASVPY-YGVK 431
           GC GA K  +C L  +                  F  +E +   ++  +Y ++   Y  +
Sbjct: 74  GCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSE 133

Query: 430 HEYTKSWDDTQTYLQCCGVKSPNDW 356
             +  ++D  Q   +CCGVK+  DW
Sbjct: 134 TAFKDAFDTVQEKFECCGVKTYTDW 158



 Score = 23.0 bits (47), Expect(2) = 0.004
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
 Frame = -1

Query: 355 HGNLPESCCRE----AYPGKRIDCKSNQNPTTIYVD-----GCLDKVIE 236
           +G +P SCC E    +YP        +Q P   Y       GC D V E
Sbjct: 196 YGRVPSSCCNEHGKLSYP-NNCGRSFSQAPLNTYAQFINTRGCADAVYE 243


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
 Frame = -1

Query: 490 KVLTTLDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPND--------WHGN---- 347
           K+LT+L RELY +    G+    T+SWD  Q+  +CCGV   ++        W+ +    
Sbjct: 127 KMLTSL-RELYGTHDMKGI----TESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAP 181

Query: 346 ---LPESCCREAYPGKRIDCKSN 287
              +PESCC    P +   C+SN
Sbjct: 182 KLLIPESCC---IPSEIERCRSN 201


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
 Frame = -1

Query: 619 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXLQFVFREKVLTTLDRELYASVPYY 440
           +  LG CGA    + +LL +                L   +++KV +  +         Y
Sbjct: 40  VGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSVKENVREIVKSKY 99

Query: 439 GVKHE------YTKSWDDTQTYLQCCGVKSPNDW 356
           GV          T+  D  Q Y +CCG   P D+
Sbjct: 100 GVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDY 133


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 617 EDHYGDSHGHDHADRRYEHVVAH 685
           +DH  DSHGH H    ++H  +H
Sbjct: 377 DDHGHDSHGHSHDHNEHDHGHSH 399


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 617 EDHYGDSHGHDHADRRYEHVVAH 685
           +DH  DSHGH H    ++H  +H
Sbjct: 395 DDHGHDSHGHSHDHNEHDHGHSH 417


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 619 LSLLGCCGAAKEVKCMLLTY 560
           ++ LGCCGAAKE + +L  Y
Sbjct: 96  VAFLGCCGAAKEWRPLLCCY 115


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
 Frame = -1

Query: 619 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXLQFVFREKVLTTLDREL-YASVPY 443
           +++LGCCG     +  L+ Y                     ++ +   L   L Y    Y
Sbjct: 127 VAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQHY 186

Query: 442 YGVKHEYTKSWDDTQTYLQCCGVKSPND---WHGNLPESC 332
           Y       +S D  QT  +CCG    +D   +  ++P SC
Sbjct: 187 YQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 638 HGHDHADRRYEHVVAHQRA*ERTRRP 715
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 638 HGHDHADRRYEHVVAHQRA*ERTRRP 715
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 176  HYNCD--NDGSSTNIHGVLSQELDDLVKATVDINRGRVLIGFAIYSLPRVG 322
            H N D  ND     +H V+S+ L   +K  +D+ +  + I  +++S+P  G
Sbjct: 853  HNNADHSNDSIDFQVH-VISRNLSFHLKLEIDVFQRNITISTSLFSVPAAG 902


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 126 RFEDFMTAPTKLIDCMIRCNYCYCLLCVINNAP 28
           R ++F   PT  I C + C   YC L VI+  P
Sbjct: 324 RIKNFGMRPTMFIGCFLTC--LYCALVVISTPP 354


>U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin family
           protein 10 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 412 WDDTQTYLQCCGVKSPNDW 356
           W +TQ    CCGV +  DW
Sbjct: 154 WANTQDLFGCCGVYNSTDW 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,435
Number of Sequences: 27780
Number of extensions: 352918
Number of successful extensions: 903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)