Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a04
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    45   7e-07
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 45.2 bits (102), Expect = 7e-07
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 3/142 (2%)
 Frame = -1

Query: 619 LSLLGCCGAAKEVKCMLLTYYXXXXXXXXXXXXXXXLQFVF--REKVLTTLDRELYASVP 446
           +S  GCCGA +E  CM +T+                  F+    +     +  +      
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFN 124

Query: 445 YYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGN-LPESCCREAYPGKRIDCKSNQNPTTI 269
            Y +  E     D  Q  LQCCGV S +D++   +P SCC    P       SN      
Sbjct: 125 GYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNS--PENNTCSISNS----- 177

Query: 268 YVDGCLDKVIEFLREDAVYVGT 203
           Y +GC    +E L++     GT
Sbjct: 178 YTNGC----VEALKDTVKLAGT 195


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 569 AHVLHFSFHHIRCDVSGRDLAVRVQREGSDNPRP 468
           A  + FS   I   V   +LAVR+QR+  +N RP
Sbjct: 311 AKQIGFSDKQIASVVKSSELAVRIQRQ-ENNIRP 343


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 25  SRCVINYTKQTIT 63
           SRCVI+Y K  IT
Sbjct: 118 SRCVIDYVKFHIT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,194
Number of Sequences: 438
Number of extensions: 4095
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)