Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a03
         (811 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2110|AAN09656.1|  968|Drosophila melanogaster CG15028-P...    29   9.9  
AE014134-1504|AAN10666.1|  108|Drosophila melanogaster CG31894-P...    29   9.9  

>AE014298-2110|AAN09656.1|  968|Drosophila melanogaster CG15028-PB,
           isoform B protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 394 LQGKCATLLEISVLRSQYRPSIVTTAAPPFKPKRITASR 278
           +QG   TL+E S  R     ++ TT APP KP   TA+R
Sbjct: 64  VQGNTPTLMEASTTRGGKHATVPTTQAPP-KPS-TTATR 100


>AE014134-1504|AAN10666.1|  108|Drosophila melanogaster CG31894-PA
           protein.
          Length = 108

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 526 FCFVCHNKI-YSILLSQLSCFFYCLVGWT 443
           +C +C  KI +  +   L+  +YCLV WT
Sbjct: 80  WCAICKLKILWESISDSLASIYYCLVSWT 108


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,296,253
Number of Sequences: 53049
Number of extensions: 585958
Number of successful extensions: 1540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)