Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a03
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC006783-1|AAF60677.1|  143|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    28   9.1  

>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = -1

Query: 592 LSLMIYDLL*TTKFRFIGHIYIFCFVCHNKIYSILLSQLSCFFYCL--VGWTSS*PIWC* 419
           L+L   DLL      F+  + ++    HN  Y  L  QL  +FY L  +G T S  ++  
Sbjct: 60  LALSFSDLLTLVASIFVFSVPVYAENSHNPEYIDLSVQLIVWFYPLAQIGLTMS--VYVT 117

Query: 418 VVTGAHKHLQGKCATLLEISVLRSQYRPSIVTTA 317
           ++   H++L G C   L   +  S    +++  A
Sbjct: 118 ILVSVHRYL-GVCHPFLIRRISNSNAVKAVIVAA 150


>AC006783-1|AAF60677.1|  143|Caenorhabditis elegans Hypothetical
           protein Y48D7A.1 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 596 FLVHI*CN*NNSHFY*VSFYNILYVYILNFYIFSKNKFFINQIISNRPSNTKYSV 760
           F +HI C+  ++ FY  + YN L++ + N  +   N++   ++ +N    TKY +
Sbjct: 15  FAIHIDCSEESTFFYFDNEYN-LFLSVQN--VTEVNRYIAFKVDTNADETTKYMI 66


>Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical
           protein ZC455.6a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 570 YCELLNLDLLVISISFVLFA 511
           + E  N+DL++ S+SF LFA
Sbjct: 492 FIEFYNIDLIIYSVSFTLFA 511


>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -3

Query: 686 KNLKYIHIKYYKMKPNKNESYFSYIRYVLRKSKSNDLRFTVN 561
           ++L+   IK+   + N N ++ +++RY+L  SK  DL FT++
Sbjct: 339 EDLRRDKIKFSAPQFNVN-NWLNHLRYILNLSKIEDLSFTLS 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,709
Number of Sequences: 27780
Number of extensions: 332383
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)