Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a03
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 535 IYIFCFVCHNKIYSILLSQLS 473
           ++  CFVC N +Y I+   +S
Sbjct: 411 VFPVCFVCFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 535 IYIFCFVCHNKIYSILLSQLS 473
           ++  CFVC N +Y I+   +S
Sbjct: 411 VFPVCFVCFNLMYWIIYLHIS 431


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 538 HIYIFCFVCHNKIYSILLSQLSCFFYC 458
           H  + CFVC +   +  L +L  + +C
Sbjct: 20  HGQVICFVCKDITSTSALYRLKLYLFC 46


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 786 LLEETTKKSTEYFVFDGLLDII 721
           +++E T  S  YF+ +G++DI+
Sbjct: 483 IIKEGTIGSKMYFIQEGIVDIV 504


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 786 LLEETTKKSTEYFVFDGLLDII 721
           +++E T  S  YF+ +G++DI+
Sbjct: 451 IIKEGTIGSKMYFIQEGIVDIV 472


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 686 KNLKYIHIKYYKMKPNKNESYFSYI 612
           ++L+++H   Y+  P  +ESY SY+
Sbjct: 359 QSLQHLH---YRQPPTLSESYSSYV 380


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 535 IYIFCFVCHNKIYSIL 488
           ++  CFVC N +Y I+
Sbjct: 349 VFPVCFVCFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,899
Number of Sequences: 438
Number of extensions: 4458
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)