Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a02
(845 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119144-1|AAM51004.1| 511|Drosophila melanogaster RE48727p pro... 94 2e-19
AE014297-3209|AAF56041.3| 872|Drosophila melanogaster CG4917-PB... 94 2e-19
AE014297-3208|AAN13917.2| 853|Drosophila melanogaster CG4917-PA... 94 2e-19
BT016081-1|AAV36966.1| 921|Drosophila melanogaster LD46555p pro... 31 2.0
AY061308-1|AAL28856.1| 805|Drosophila melanogaster LD22423p pro... 31 2.0
AE014134-3003|AAF53728.1| 921|Drosophila melanogaster CG18398-P... 31 2.0
>AY119144-1|AAM51004.1| 511|Drosophila melanogaster RE48727p
protein.
Length = 511
Score = 93.9 bits (223), Expect = 2e-19
Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 11/234 (4%)
Frame = -2
Query: 676 WDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRD-FAYWLP 500
WD ++ C P N Q++CS+L G V WEG V V + V N D A +LP
Sbjct: 279 WDRFHALCAQPVHEQPNKIKAQLRCSLLNGMPVIWEGSVTKVEISRVSNFLEDTIANYLP 338
Query: 499 GFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVAR----QSGKSCHLDNLNEYTYE 332
+L +C +GE S + + A+CE SV + QSG SC L N Y YE
Sbjct: 339 VWLGRMLRCLHGENISQHFKCDPKLD--AQCEEWRSVFKTFNAQSG-SCTLQRWNRYEYE 395
Query: 331 --VKLMMEASGGILKRH--AEIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPYNIGA 164
VK+ + SG +L R ++++ H F NFTRLL D + F G L N + A
Sbjct: 396 LLVKVGTKRSGRLLGRSTTTDVILRAHHDFGNFTRLLSEGDVVLFYGILHNS----RLLA 451
Query: 163 KDLTIRGYEINCLECKEARGSVTLKTSSASKF--SELFKTIVNDCVVSTKYILN 8
++ ++ I C+EC+ S L T+S + + + D + KY+LN
Sbjct: 452 DNVQVKLKTIECVECR----SRDLGTASIERVVAASPMDARLQDLMRGIKYLLN 501
>AE014297-3209|AAF56041.3| 872|Drosophila melanogaster CG4917-PB,
isoform B protein.
Length = 872
Score = 93.9 bits (223), Expect = 2e-19
Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 11/234 (4%)
Frame = -2
Query: 676 WDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRD-FAYWLP 500
WD ++ C P N Q++CS+L G V WEG V V + V N D A +LP
Sbjct: 640 WDRFHALCAQPVHEQPNKIKAQLRCSLLNGMPVIWEGSVTKVEISRVSNFLEDTIANYLP 699
Query: 499 GFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVAR----QSGKSCHLDNLNEYTYE 332
+L +C +GE S + + A+CE SV + QSG SC L N Y YE
Sbjct: 700 VWLGRMLRCLHGENISQHFKCDPKLD--AQCEEWRSVFKTFNAQSG-SCTLQRWNRYEYE 756
Query: 331 --VKLMMEASGGILKRH--AEIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPYNIGA 164
VK+ + SG +L R ++++ H F NFTRLL D + F G L N + A
Sbjct: 757 LLVKVGTKRSGRLLGRSTTTDVILRAHHDFGNFTRLLSEGDVVLFYGILHNS----RLLA 812
Query: 163 KDLTIRGYEINCLECKEARGSVTLKTSSASKF--SELFKTIVNDCVVSTKYILN 8
++ ++ I C+EC+ S L T+S + + + D + KY+LN
Sbjct: 813 DNVQVKLKTIECVECR----SRDLGTASIERVVAASPMDARLQDLMRGIKYLLN 862
>AE014297-3208|AAN13917.2| 853|Drosophila melanogaster CG4917-PA,
isoform A protein.
Length = 853
Score = 93.9 bits (223), Expect = 2e-19
Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 11/234 (4%)
Frame = -2
Query: 676 WDDYYTHCNNPSWTDYNIAATQIKCSVLEGANVNWEGYVKDVSLLNVKNKWRD-FAYWLP 500
WD ++ C P N Q++CS+L G V WEG V V + V N D A +LP
Sbjct: 621 WDRFHALCAQPVHEQPNKIKAQLRCSLLNGMPVIWEGSVTKVEISRVSNFLEDTIANYLP 680
Query: 499 GFLQEYFKCYYGEEYSNVCRGSDGVQSVAECEFVSSVAR----QSGKSCHLDNLNEYTYE 332
+L +C +GE S + + A+CE SV + QSG SC L N Y YE
Sbjct: 681 VWLGRMLRCLHGENISQHFKCDPKLD--AQCEEWRSVFKTFNAQSG-SCTLQRWNRYEYE 737
Query: 331 --VKLMMEASGGILKRH--AEIVIHFGHYFTNFTRLLRSDDKIRFKGTLSNENRPYNIGA 164
VK+ + SG +L R ++++ H F NFTRLL D + F G L N + A
Sbjct: 738 LLVKVGTKRSGRLLGRSTTTDVILRAHHDFGNFTRLLSEGDVVLFYGILHNS----RLLA 793
Query: 163 KDLTIRGYEINCLECKEARGSVTLKTSSASKF--SELFKTIVNDCVVSTKYILN 8
++ ++ I C+EC+ S L T+S + + + D + KY+LN
Sbjct: 794 DNVQVKLKTIECVECR----SRDLGTASIERVVAASPMDARLQDLMRGIKYLLN 843
>BT016081-1|AAV36966.1| 921|Drosophila melanogaster LD46555p
protein.
Length = 921
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 20 LC-RYNAIIHNCF-----KQLREFRCGRRLQSHRAARLFAFQTVNFVAPYSQVLSANVIR 181
LC RY A++ NCF + EFR + RL AFQ NF Q++++ +
Sbjct: 757 LCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQNFFHELLQLVNSELTT 816
Query: 182 SVFV 193
+V
Sbjct: 817 GGYV 820
>AY061308-1|AAL28856.1| 805|Drosophila melanogaster LD22423p
protein.
Length = 805
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 20 LC-RYNAIIHNCF-----KQLREFRCGRRLQSHRAARLFAFQTVNFVAPYSQVLSANVIR 181
LC RY A++ NCF + EFR + RL AFQ NF Q++++ +
Sbjct: 667 LCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQNFFHELLQLVNSELTT 726
Query: 182 SVFV 193
+V
Sbjct: 727 GGYV 730
>AE014134-3003|AAF53728.1| 921|Drosophila melanogaster CG18398-PA
protein.
Length = 921
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 20 LC-RYNAIIHNCF-----KQLREFRCGRRLQSHRAARLFAFQTVNFVAPYSQVLSANVIR 181
LC RY A++ NCF + EFR + RL AFQ NF Q++++ +
Sbjct: 757 LCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQNFFHELLQLVNSELTT 816
Query: 182 SVFV 193
+V
Sbjct: 817 GGYV 820
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,474,531
Number of Sequences: 53049
Number of extensions: 759884
Number of successful extensions: 2196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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