Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a02
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U50311-13|AAA92316.1|  108|Caenorhabditis elegans Hypothetical p...    28   9.6  

>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 715 FLSEYEDNNYHINWDDYYTHCNN 647
           F    E+ NY ++ +DYY  CNN
Sbjct: 787 FCERLENGNYGLDCEDYYISCNN 809


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = -2

Query: 655 CNNPSWTDYNIAATQIKCSVLE--GANVN----WEGYVKDVSLL 542
           CN+P +TD N+ A +   S  +   ANV+     E  +KDVS+L
Sbjct: 104 CNSPDYTDLNLPAFRYGQSAFQQISANVDVKPPRENVIKDVSIL 147


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 156 KSLAPML*GRFSFESVPLKRILSSDRSKRVK 248
           +++ PML G F+ ESVP+K  L +   +R+K
Sbjct: 905 ENIIPMLIGFFNKESVPMKEQLFATLQRRLK 935


>U50311-13|AAA92316.1|  108|Caenorhabditis elegans Hypothetical
           protein C25E10.11 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 208 KGTLSNENRPYNIGAKDLTIRGYEINCL 125
           K  L+ ENRPY I +  L ++ Y+  CL
Sbjct: 29  KPRLARENRPYTILSTHLNLKDYDRLCL 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,700
Number of Sequences: 27780
Number of extensions: 397280
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)