Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p23
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    31   0.23 
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   3.7  

>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 278 NKILYYIYTEQRTTWKYYCILFFNINFNYTTIVVLI 171
           N IL  IY +     KY+ +L+F +N+ YT I+VLI
Sbjct: 381 NAILIGIYGQMNYYLKYWKLLWF-LNYGYTDILVLI 415


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 124 ILDLICSNIVIIWNVKYFQKCQYKIVKYHK 35
           +L  +C   V++ NVK  Q  + K V YHK
Sbjct: 136 VLSAVCHGPVLLANVKNPQSVEGKTVVYHK 165


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 322 FYRKNLYLISSSLENVQINTLKQLQSKI*DLYIFD 426
           F++  LY    +LENV IN    +++ I D+Y  D
Sbjct: 480 FFQHALYRGIDALENVDINLETSIKTYISDIYFAD 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,145
Number of Sequences: 5004
Number of extensions: 52272
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)