Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p23
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF423423-1|AAQ04064.1|  494|Homo sapiens six transmembrane prost...    31   5.7  
AF423422-1|AAQ04063.1|  459|Homo sapiens six transmembrane prost...    31   5.7  

>AF423423-1|AAQ04064.1|  494|Homo sapiens six transmembrane prostate
           protein 2 variant 2 protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 305 IYRYFYCIMNKILY-YIYTEQRTTWKYYCILFFNINFNYTTIVVLIRIQIP 156
           ++ +FYC++  ++Y Y+Y ++  T++   I   N  F  T + +L  + +P
Sbjct: 212 VFLFFYCVIRDVIYPYVYEKKDNTFR-MAISIPNRIFPITALTLLALVYLP 261


>AF423422-1|AAQ04063.1|  459|Homo sapiens six transmembrane prostate
           protein 2 variant 1 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 305 IYRYFYCIMNKILY-YIYTEQRTTWKYYCILFFNINFNYTTIVVLIRIQIP 156
           ++ +FYC++  ++Y Y+Y ++  T++   I   N  F  T + +L  + +P
Sbjct: 212 VFLFFYCVIRDVIYPYVYEKKDNTFR-MAISIPNRIFPITALTLLALVYLP 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,904,397
Number of Sequences: 237096
Number of extensions: 1556381
Number of successful extensions: 5586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5586
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)