Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p22
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   5.0  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.7  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   8.8  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.8  

>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 418 LCPQFEAVAADAHRPVTPPEIVLRA 344
           L  +FE + AD  RP TPP  + RA
Sbjct: 628 LINEFENLFADLERPSTPPVEIERA 652


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +3

Query: 381 WASAATASNCGHNSL*FINSIHAITHFRFILY 476
           +AS+   +NC   ++ F+ +I  ++++ ++LY
Sbjct: 15  FASSDKPNNCSRKNMFFLKNIIVLSNYLYLLY 46


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 43  FANINKIQYTDSQNYTTFATNTEHISRTL*H*QHNLISRVRLVSIGFDIPTVMTDRYSSF 222
           F NI     TDS   TT     +H   T+ H  H+L  R ++ S   DI      RY   
Sbjct: 337 FDNIEWTLPTDSP--TTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKS 394

Query: 223 VKGSN 237
            + S+
Sbjct: 395 EESSS 399


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +2

Query: 17  RVLQQMSSNLQILTRYNTQ----IHKIILLLPLTQNIFLGHYNINNI 145
           ++L++++ NLQI T Y TQ    +   I +L ++++ +  H++ + I
Sbjct: 587 KLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFLHFSSSYI 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,844
Number of Sequences: 5004
Number of extensions: 40952
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)