Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p21
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.0  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   5.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   8.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 308  ISSFNFNKVMLSNNASMVRVGLSN-DN*HNFYK-HLQSTIYVYQSSTTTSSD 159
            +++F  NK  L +     +  +   +N +  YK H Q  +    SST+TSSD
Sbjct: 1267 LANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTSSD 1318


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -1

Query: 176 TTTSSDY-----PNPSGIPLSTSSCAELSHSFY 93
           T ++SDY     PNP G+  ++SSC  + + F+
Sbjct: 230 TYSASDYLPAYPPNPEGMSSTSSSCKTIVYQFF 262


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 140  IPLSTSSCAELSHSFYVMFYGSVHTFVM 57
            + LS+S C   S SFY+   GS H  +M
Sbjct: 2305 LKLSSSDCYLWSSSFYIEEIGSTHVRLM 2332


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 227  HNFYKHLQSTIYVYQSSTTTSSDYPNPSGIPLSTSSCAELSHSFY 93
            H+  ++ ++    Y  ST   S YP+P+G+ +    C  + HS Y
Sbjct: 1698 HDIERYTRAKFLDY--STDAQSMYPSPTGVLIGIDLCYNM-HSAY 1739


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 284 VMLSNNASMVRVGLSNDN*HNFYKHLQSTIYVYQSSTTTSSDY 156
           V L N    + +G+  +   NFYK+L   +++     + +SD+
Sbjct: 88  VSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGEVESMTSDF 130


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 305 SSFNFNKVMLSNNASMVRVGLSNDN*HNFYKHLQSTIYVYQSSTTTSSDYPNPSGIPLST 126
           S  +FN + L  + +++    S+    N Y  + ST+ V + + T S  Y N S   ++T
Sbjct: 130 SILSFNTIRLIPSTNVINT--SHYKGFNRYPTISSTVKVGKRAATASFSYTNVSSSVIAT 187

Query: 125 S 123
           +
Sbjct: 188 A 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,536
Number of Sequences: 5004
Number of extensions: 56573
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)