Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p18
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.15 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.15 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 399 SALVLLAQHLARPEYCGTVIQLAWKLHLETQVD 497
           SA++L++  L+R  YCG    L+W   ++  +D
Sbjct: 673 SAVLLISDRLSRDLYCGIRAGLSWLERIQIALD 705


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 399 SALVLLAQHLARPEYCGTVIQLAWKLHLETQVD 497
           SA++L++  L+R  YCG    L+W   ++  +D
Sbjct: 711 SAVLLISDRLSRDLYCGIRAGLSWLERIQIALD 743


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -1

Query: 303 LFYLSCQEDFTASLLAEEYILKIINIVVEKIEHSLNKENEQFIFLTRTLANMCDKSVYTL 124
           +F +SC  + +      E +LK   I+ E+I   L++  ++   +T    +   K + + 
Sbjct: 126 IFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASF 185

Query: 123 ILNMLME 103
           + N+L E
Sbjct: 186 MENLLQE 192


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -1

Query: 303 LFYLSCQEDFTASLLAEEYILKIINIVVEKIEHSLNKENEQFIFLTRTLANMCDKSVYTL 124
           +F +SC  + +      E +LK   I+ E+I   L++  ++   +T    +   K + + 
Sbjct: 420 IFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASF 479

Query: 123 ILNMLME 103
           + N+L E
Sbjct: 480 MGNLLQE 486


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 60  HAEIILWLLGNMFNICGEHL 1
           HA+ I W+   M   C  HL
Sbjct: 555 HAQQIAWMALKMIQACSHHL 574


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 438 QDVRDAGLEALVHFVYTVE-DLKSDHLDRIVVAVQKLDLSEQTSQ 307
           QDV  + L ALV F+Y  E ++    L   +   + L +S  T Q
Sbjct: 74  QDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQ 118


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 624 QLCYRLGLGCRCSQLLGTVLQY 689
           +L Y++GL   C+ +LG  L +
Sbjct: 205 ELAYKMGLESTCTLILGRHLGF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,497
Number of Sequences: 438
Number of extensions: 4623
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)