Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p16
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.12 
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    30   0.49 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   0.85 
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   3.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.9  

>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +1

Query: 274 QQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVW 453
           Q+    L TV+ +      + D  T  ++ CH + K+F  E S+  L K  +       W
Sbjct: 367 QRYNQKLLTVLSSNAESFNVSDMQTLGLNPCHSLDKSFVSEISQIWLKKHINWQYGKYFW 426

Query: 454 AAKTSL 471
             + SL
Sbjct: 427 LRRVSL 432


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 796 IKKQ*MTPRTNTTSCSQPHV-LVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLR 620
           ++K  +TP ++  +   P + L+ SQ    L P    P     LP+  S    P Q S  
Sbjct: 234 VRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHP-LPSHLSQSNVPPQLS-- 290

Query: 619 HDVAPHPIPERKRSRP 572
           H   P P P R  S+P
Sbjct: 291 HSSVPSPAPPRSVSQP 306


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 669 RCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPL 809
           +CC   G +    +G+      K  G E  ++   GV HCF++ YP+
Sbjct: 269 QCC---GWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPM 312


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 HGVPEQQKEDTLATVVETIVSKLKLMDFN 345
           H V     E+TL+ + E ++S +K+ DFN
Sbjct: 613 HAVKYGPSENTLSLIPELLLSPIKVTDFN 641


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 634 QTSLRHDV--APHPIPERKRSRPESSTWLLR 548
           Q SLR D   +PHPIP    S  ES + +LR
Sbjct: 564 QVSLREDYWKSPHPIPPSSYSFVESPSSILR 594


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 646 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 557
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 224 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 252



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 646 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 557
           +H +  S  HD  P P+P    ++P+   W
Sbjct: 253 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,471
Number of Sequences: 5004
Number of extensions: 72358
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)