Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p16
(861 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S72487-2|AAD14106.1| 157|Homo sapiens orf3 5' of PD-ECGF/TP pro... 33 1.8
BC146661-1|AAI46662.1| 686|Homo sapiens STIM2 protein protein. 31 7.1
AL136577-1|CAB66512.2| 769|Homo sapiens hypothetical protein pr... 31 7.1
AK123032-1|BAC85519.1| 274|Homo sapiens factor. protein. 31 7.1
AF328905-1|AAK82337.1| 746|Homo sapiens stromal interaction mol... 31 7.1
AB040915-1|BAA96006.1| 818|Homo sapiens KIAA1482 protein protein. 31 7.1
AB075859-1|BAB85565.1| 309|Homo sapiens KIAA1979 protein protein. 30 9.4
>S72487-2|AAD14106.1| 157|Homo sapiens orf3 5' of PD-ECGF/TP
protein.
Length = 157
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -3
Query: 772 RTNTTSCSQPHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIP 593
R T + PH WS P P R S E HL E P T R+ V P+P
Sbjct: 58 RPPTPLSALPHSGTWSGPPGPWPPQRRTASREAHLGTPDLNPESPSDTLTRYSVPPYPDL 117
Query: 592 ERKRSRPE--SSTWL 554
+ + P +WL
Sbjct: 118 KSQTPNPRGFDKSWL 132
>BC146661-1|AAI46662.1| 686|Homo sapiens STIM2 protein protein.
Length = 686
Score = 30.7 bits (66), Expect = 7.1
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 283 EDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPIL-LKLCDMNLRSKVWAA 459
EDTL ++E + +F +N+ + + E S I LK+ D + R K+
Sbjct: 226 EDTLQWLIEFVELPQYEKNFRDNNVKGT-TLPRIAVHEPSFMISQLKISDRSHRQKL--- 281
Query: 460 KTSLKGSGITLSEFLTKRRH----DIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEV 627
LK + L LT+ H D ++ GV CW Y Q H ++
Sbjct: 282 --QLKALDVVLFGPLTRPPHNWMKDFILTVSIVIGVGGCWF----AYTQNKTSKEHVAKM 335
Query: 628 MSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATR 732
M DL++L Q+R + ++ + A +
Sbjct: 336 MKDLESLQTAEQSLMDLQERLEKAQEENRNVAVEK 370
>AL136577-1|CAB66512.2| 769|Homo sapiens hypothetical protein
protein.
Length = 769
Score = 30.7 bits (66), Expect = 7.1
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 283 EDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPIL-LKLCDMNLRSKVWAA 459
EDTL ++E + +F +N+ + + E S I LK+ D + R K+
Sbjct: 162 EDTLQWLIEFVELPQYEKNFRDNNVKGT-TLPRIAVHEPSFMISQLKISDRSHRQKL--- 217
Query: 460 KTSLKGSGITLSEFLTKRRH----DIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEV 627
LK + L LT+ H D ++ GV CW Y Q H ++
Sbjct: 218 --QLKALDVVLFGPLTRPPHNWMKDFILTVSIVIGVGGCWF----AYTQNKTSKEHVAKM 271
Query: 628 MSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATR 732
M DL++L Q+R + ++ + A +
Sbjct: 272 MKDLESLQTAEQSLMDLQERLEKAQEENRNVAVEK 306
>AK123032-1|BAC85519.1| 274|Homo sapiens factor. protein.
Length = 274
Score = 30.7 bits (66), Expect = 7.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 714 VCSCDQTKTCGCEQEVVFVLGVIHC---FFICYPLQLSVHYCHC 836
VC C C C V+V G +H ++C +++ V C C
Sbjct: 88 VCICVCAHVCTCVHSFVYVCGCVHVGMRVYLCEHVRMCVSLCAC 131
>AF328905-1|AAK82337.1| 746|Homo sapiens stromal interaction
molecule 2 protein.
Length = 746
Score = 30.7 bits (66), Expect = 7.1
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 283 EDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPIL-LKLCDMNLRSKVWAA 459
EDTL ++E + +F +N+ + + E S I LK+ D + R K+
Sbjct: 139 EDTLQWLIEFVELPQYEKNFRDNNVKGT-TLPRIAVHEPSFMISQLKISDRSHRQKL--- 194
Query: 460 KTSLKGSGITLSEFLTKRRH----DIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEV 627
LK + L LT+ H D ++ GV CW Y Q H ++
Sbjct: 195 --QLKALDVVLFGPLTRPPHNWMKDFILTVSIVIGVGGCWF----AYTQNKTSKEHVAKM 248
Query: 628 MSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATR 732
M DL++L Q+R + ++ + A +
Sbjct: 249 MKDLESLQTAEQSLMDLQERLEKAQEENRNVAVEK 283
>AB040915-1|BAA96006.1| 818|Homo sapiens KIAA1482 protein protein.
Length = 818
Score = 30.7 bits (66), Expect = 7.1
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Frame = +1
Query: 283 EDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPIL-LKLCDMNLRSKVWAA 459
EDTL ++E + +F +N+ + + E S I LK+ D + R K+
Sbjct: 211 EDTLQWLIEFVELPQYEKNFRDNNVKGT-TLPRIAVHEPSFMISQLKISDRSHRQKL--- 266
Query: 460 KTSLKGSGITLSEFLTKRRH----DIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEV 627
LK + L LT+ H D ++ GV CW Y Q H ++
Sbjct: 267 --QLKALDVVLFGPLTRPPHNWMKDFILTVSIVIGVGGCWF----AYTQNKTSKEHVAKM 320
Query: 628 MSDLDALAKTTMPEDAAQKRAQTGKDTKESAAATR 732
M DL++L Q+R + ++ + A +
Sbjct: 321 MKDLESLQTAEQSLMDLQERLEKAQEENRNVAVEK 355
>AB075859-1|BAB85565.1| 309|Homo sapiens KIAA1979 protein protein.
Length = 309
Score = 30.3 bits (65), Expect = 9.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 343 NTSNIS-RCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAK 462
+T N S +C+ GKTF+ E + I+ + + NLRS + AK
Sbjct: 149 HTGNKSYKCNECGKTFSKELTHAIIDVILERNLRSAMSVAK 189
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,195,806
Number of Sequences: 237096
Number of extensions: 2710725
Number of successful extensions: 6755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6747
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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