Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p14
         (403 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7N2Z4 Cluster: Hypothetical gene; n=1; Photorhabdus lu...    32   3.7  
UniRef50_Q9VEJ2 Cluster: Nucleolar protein 14 homolog; n=2; Soph...    32   3.7  
UniRef50_Q4S6C2 Cluster: Chromosome 9 SCAF14729, whole genome sh...    31   8.5  
UniRef50_Q05FW6 Cluster: Putative uncharacterized protein; n=1; ...    31   8.5  

>UniRef50_Q7N2Z4 Cluster: Hypothetical gene; n=1; Photorhabdus
           luminescens subsp. laumondii|Rep: Hypothetical gene -
           Photorhabdus luminescens subsp. laumondii
          Length = 176

 Score = 32.3 bits (70), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 223 ETF*VDYFKDLEKLSPAALLHFPTFVHFHIY*AILLNLRYYTFK 354
           E + ++Y + +EK      L +PT  + H+  +I  NLR Y FK
Sbjct: 26  EKYAINYIESMEKEIDVICLPYPTLFYEHVTCSISKNLREYIFK 69


>UniRef50_Q9VEJ2 Cluster: Nucleolar protein 14 homolog; n=2;
           Sophophora|Rep: Nucleolar protein 14 homolog -
           Drosophila melanogaster (Fruit fly)
          Length = 852

 Score = 32.3 bits (70), Expect = 3.7
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 209 IRYSRRLFEWTISKILRS*VQRLCYIFPHLYTFTYTKPSSLTSAITHLNHQNKPLEMRKT 388
           ++Y + LFE    + +R   Q L  + P+LY  T   P  +++ +  +  + K  E RK 
Sbjct: 476 LQYLKDLFEDASEQDIREHFQLLSKLMPYLYELTQLNPERMSNTLLEV-IKEKYEEFRKN 534

Query: 389 FKIY 400
            K+Y
Sbjct: 535 HKMY 538


>UniRef50_Q4S6C2 Cluster: Chromosome 9 SCAF14729, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 9 SCAF14729, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 698

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
           W+  ++K+ ++  T  +  +  Y +    WT  KI ++ VQR  + F H+  F
Sbjct: 324 WERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 376


>UniRef50_Q05FW6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 162

 Score = 31.1 bits (67), Expect = 8.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 38  NMIYFRVQFXNTFKPXVCI*KRLTIYELTSSRFHFSNWKGESIKSQVFHH 187
           N+IYF+  F   F P + I K+ T  EL   +   S  K   +   + +H
Sbjct: 40  NLIYFKKYFLQFFNPEINIFKKFTFNELIFRKIKISIVKNTFVYMHIMNH 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,865,671
Number of Sequences: 1657284
Number of extensions: 6724282
Number of successful extensions: 12748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12741
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)