Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p14
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    28   3.2  
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511...    27   7.3  
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237...    27   7.3  
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166           26   9.7  
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190...    26   9.7  

>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 266 VQRLCYIFPHLYTFTYTKPSSLTSAITHLNHQNKPL 373
           V    Y+FPHL  F + +P SL+S    L+    P+
Sbjct: 858 VDTFVYLFPHLKHFLHREPPSLSSETALLSCIKPPV 893


>09_06_0374 +
           22649455-22650024,22650085-22650637,22650812-22651147,
           22651171-22652605,22652939-22653062
          Length = 1005

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 176 VFHHTA*SFVSIRYSRRLFEW--TISKILRS*VQRLCYIFP 292
           +F H    F+ +R S RLF W  T+  +    V   CY  P
Sbjct: 99  IFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPSVVGGCYFQP 139


>02_05_0701 +
           31022485-31022648,31023569-31023611,31023712-31023777,
           31024007-31024062,31024091-31024190,31024290-31024472,
           31024953-31025001,31025089-31025169,31025209-31025268,
           31025394-31025514,31025612-31025693,31025783-31025868,
           31026011-31026111,31026246-31026387,31026488-31026638,
           31026710-31026937
          Length = 570

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 208 RNKRLGCMME-YLGFDTFTFPVGKMKPTTRQFVDCESFL 95
           RNK L      Y  + T+ FP  ++KP T+ F D  S L
Sbjct: 49  RNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSEL 87


>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
          Length = 983

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 176 VFHHTA*SFVSIRYSRRLFEW--TISKILRS*VQRLCYIFP 292
           +F H    F+ +R S RLF W  T+  +    V   CY  P
Sbjct: 99  IFAHLCEMFIGVRPSLRLFRWFFTVQPVSPPSVVGGCYFQP 139


>08_01_0233 +
           1876940-1877509,1907940-1908195,1908290-1908589,
           1908777-1908939,1908958-1908994,1910122-1910742
          Length = 648

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 176 VFHHTA*SFVSIRYSRRLFEW--TISKILRS*VQRLCYIFP 292
           +F H    F+ +R S RLF W  T+  +    V   CY  P
Sbjct: 99  IFAHLCEMFIGVRPSLRLFRWFFTVQPVSPPSVVGGCYFQP 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,519
Number of Sequences: 37544
Number of extensions: 168763
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)