Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p14
(403 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 30 3.3
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 30 3.3
BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein. 30 3.3
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 30 3.3
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 30 3.3
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 30 3.3
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 30 3.3
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 30 3.3
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 30 3.3
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 30 3.3
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 30 3.3
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 30 3.3
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 30 3.3
BC125186-1|AAI25187.1| 666|Homo sapiens FLJ14959 protein protein. 29 7.7
AK027865-1|BAB55416.1| 479|Homo sapiens protein ( Homo sapiens ... 29 7.7
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 256 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 308
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 136 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 188
>BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein.
Length = 429
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 85 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 137
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 136 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 188
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 256 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 308
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 129 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 181
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 293 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 345
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 148 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 200
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 179 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 231
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 170 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 222
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 283 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 335
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 254 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 306
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 149 WKGESIKSQVFHHTA*SFVSIRYSRRLFEWTISKILRS*VQRLCYIFPHLYTF 307
W+ ++K ++ T + + Y + WT KI ++ VQR + F H+ F
Sbjct: 155 WERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAF 207
>BC125186-1|AAI25187.1| 666|Homo sapiens FLJ14959 protein protein.
Length = 666
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 293 HL-YTFTYTKPSSLTSAITHLNHQNKPLEMRKTFK 394
HL +TF K +L S +LN+ KPL++ +TFK
Sbjct: 514 HLPHTFKCMKGLTLESNCMNLNNVKKPLDLSETFK 548
>AK027865-1|BAB55416.1| 479|Homo sapiens protein ( Homo sapiens
cDNA FLJ14959 fis, clone PLACE4000156, moderately
similar to ZINC FINGER PROTEIN 91. ).
Length = 479
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 293 HL-YTFTYTKPSSLTSAITHLNHQNKPLEMRKTFK 394
HL +TF K +L S +LN+ KPL++ +TFK
Sbjct: 327 HLPHTFKCMKGLTLESNCMNLNNVKKPLDLSETFK 361
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,607,832
Number of Sequences: 237096
Number of extensions: 1003122
Number of successful extensions: 5225
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5225
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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