Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p14
         (403 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119589-1|AAM50243.1|  852|Drosophila melanogaster LD15947p pro...    32   0.25 
AE014297-2365|AAF55429.2|  852|Drosophila melanogaster CG5824-PA...    32   0.25 
AY061402-1|AAL28950.1|  675|Drosophila melanogaster LD33040p pro...    27   7.1  
AE014298-1930|AAF48292.1|  675|Drosophila melanogaster CG9938-PA...    27   7.1  

>AY119589-1|AAM50243.1|  852|Drosophila melanogaster LD15947p
           protein.
          Length = 852

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 209 IRYSRRLFEWTISKILRS*VQRLCYIFPHLYTFTYTKPSSLTSAITHLNHQNKPLEMRKT 388
           ++Y + LFE    + +R   Q L  + P+LY  T   P  +++ +  +  + K  E RK 
Sbjct: 476 LQYLKDLFEDASEQDIREHFQLLSKLMPYLYELTQLNPERMSNTLLEV-IKEKYEEFRKN 534

Query: 389 FKIY 400
            K+Y
Sbjct: 535 HKMY 538


>AE014297-2365|AAF55429.2|  852|Drosophila melanogaster CG5824-PA
           protein.
          Length = 852

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 209 IRYSRRLFEWTISKILRS*VQRLCYIFPHLYTFTYTKPSSLTSAITHLNHQNKPLEMRKT 388
           ++Y + LFE    + +R   Q L  + P+LY  T   P  +++ +  +  + K  E RK 
Sbjct: 476 LQYLKDLFEDASEQDIREHFQLLSKLMPYLYELTQLNPERMSNTLLEV-IKEKYEEFRKN 534

Query: 389 FKIY 400
            K+Y
Sbjct: 535 HKMY 538


>AY061402-1|AAL28950.1|  675|Drosophila melanogaster LD33040p
           protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 DTFTFPVGKMKPTTRQFVDCESFLYTHTW 80
           D F+ P G    T +QFV   +F++ H W
Sbjct: 123 DLFSRPGGLRHMTIKQFVSILNFMFHHIW 151


>AE014298-1930|AAF48292.1|  675|Drosophila melanogaster CG9938-PA
           protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 DTFTFPVGKMKPTTRQFVDCESFLYTHTW 80
           D F+ P G    T +QFV   +F++ H W
Sbjct: 123 DLFSRPGGLRHMTIKQFVSILNFMFHHIW 151


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,382
Number of Sequences: 53049
Number of extensions: 295208
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)