Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p14
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   2.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.0  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 268 DLASQDL*NSPLKKSP*IAYRNKRLGCMM 182
           D+A + + NSP K +    YR+  +G +M
Sbjct: 682 DVARRSVANSPTKNADSREYRSNSMGAVM 710


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 161 FHLSSWKNETYYSSIRRL*VVFIYTHXV 78
           FHL +  N T+YS          YTH +
Sbjct: 175 FHLETHPNVTWYSQCVTFNAFPTYTHEI 202


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 347 HLNHQNKPLEMR 382
           HL H+ KP+ MR
Sbjct: 573 HLTHKGKPIRMR 584


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 281 YIFPHLYTFTYTKPSSLTSAIT 346
           Y +P+ Y  T  +PS+   A T
Sbjct: 216 YAYPYCYNLTPNQPSAQCEATT 237


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 127 TRQFVDCESFLYTHTW 80
           T   V C++F Y+H W
Sbjct: 15  TITIVMCQTFTYSHGW 30


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 311  YTKPSSLTSAITHLNHQNKPL 373
            Y +P ++   I    +QNKP+
Sbjct: 938  YAQPQTVQDQIVSEYYQNKPI 958


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 377 SPTVYSDGLN 348
           SPT+Y D LN
Sbjct: 605 SPTMYGDALN 614


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 137 ETYYSSIRRL 108
           E Y+SSIRRL
Sbjct: 74  EQYFSSIRRL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,333
Number of Sequences: 438
Number of extensions: 1977
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)