Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    29   0.67 
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    29   0.67 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.6  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   8.3  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 499 PRYRAIAVYILQQGDFMGALSRDAANNSPSKRSASQNL 386
           P+++   V ILQQ  ++ A++ D  N++PS + A   +
Sbjct: 698 PQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADAGI 735


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 499 PRYRAIAVYILQQGDFMGALSRDAANNSPSKRSASQNL 386
           P+++   V ILQQ  ++ A++ D  N++PS + A   +
Sbjct: 610 PQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADTGI 647


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +2

Query: 50  AITLNSIFYEN--NDTNRFFLEHRCLVRIVSDVWRLGIDAPSRFTTGADGRRLVELFTPC 223
           ++ L S F ++  N  ++FFLEH C   I SD  R+         +  + R  +    P 
Sbjct: 454 SLQLQSFFEKHLGNVVDKFFLEHLCETTIESDAMRV---VTEMLVSCYENRERIPNELPM 510

Query: 224 PTYYYVYTRNEAYLIPRTYKFL-YCFC 301
                 Y+R+E++      +F+ Y  C
Sbjct: 511 VLKQIYYSRSESFKPSAIKEFIEYFLC 537


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 451 MGALSRDAANNSPSKR--SASQNLPPTMRPTK 362
           +GALS ++  +SPSK   S S  +  T++PTK
Sbjct: 215 LGALSSNSVKSSPSKSFVSISSPVQSTVKPTK 246


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 465 NKVTSWGLYPGTLLTIALAREVLRRIYHRPCDLLKICGEKLSA 337
           N+V  W +    L+  +  R V   I H P +  K+C E+L++
Sbjct: 459 NEVVLWHIPNKVLINASRKRSV---ILHLPTETFKVCSERLTS 498


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 117 VSFVLYLTSGVSEST-RLQGSRLVRTVVDSSNSLRLVPHIIMYIHGTKRTSFQGLTSSCI 293
           VSF+  L+  ++    R+Q  +++ T++D  N  +LVP ++  I    +    GL SS  
Sbjct: 340 VSFMESLSKNLTTFPYRIQSQKILPTLLDHLNDQKLVPSLLPCIFEISK----GLDSSIF 395

Query: 294 AS 299
           +S
Sbjct: 396 SS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,332
Number of Sequences: 5004
Number of extensions: 59045
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)