Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p13
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041691-1|AAH41691.1| 403|Homo sapiens F-box protein 22 protein. 38 0.048
BC032540-1|AAH32540.1| 403|Homo sapiens F-box protein 22 protein. 38 0.048
BC020204-1|AAH20204.2| 403|Homo sapiens Unknown (protein for MG... 38 0.048
AY005144-1|AAF89095.1| 403|Homo sapiens F-box protein FBX22p44 ... 38 0.048
AK223500-1|BAD97220.1| 403|Homo sapiens F-box only protein 22 i... 38 0.048
AK024048-1|BAB14798.1| 276|Homo sapiens protein ( Homo sapiens ... 38 0.048
BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthas... 30 9.6
BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein. 30 9.6
AK000492-1|BAA91203.1| 205|Homo sapiens protein ( Homo sapiens ... 30 9.6
AC073138-1|AAS07447.1| 195|Homo sapiens unknown protein. 30 9.6
AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein. 30 9.6
>BC041691-1|AAH41691.1| 403|Homo sapiens F-box protein 22 protein.
Length = 403
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>BC032540-1|AAH32540.1| 403|Homo sapiens F-box protein 22 protein.
Length = 403
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>BC020204-1|AAH20204.2| 403|Homo sapiens Unknown (protein for
MGC:31799) protein.
Length = 403
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>AY005144-1|AAF89095.1| 403|Homo sapiens F-box protein FBX22p44
protein.
Length = 403
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>AK223500-1|BAD97220.1| 403|Homo sapiens F-box only protein 22
isoform a variant protein.
Length = 403
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>AK024048-1|BAB14798.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ13986 fis, clone Y79AA1001923, weakly similar to
Homo sapiens F-box protein Fbx22 (FBX22) gene. ).
Length = 276
Score = 37.5 bits (83), Expect = 0.048
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = +3
Query: 126 VLYLTSGVSESTRLQGSRLVRTVVDSSNSLRLVPHIIMYI 245
V ++++G++E+ L+G LVR V + ++R++PH ++Y+
Sbjct: 66 VTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYM 105
>BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae) protein.
Length = 661
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 633 QIHDAALRTGPRKISSNAHNQSYKTRS*--VVIFIFNRDIDSIP*KYPDIVL*QFIYYNK 460
+I D +L RKI N S++ + I +FN D+D++ K P + + Y
Sbjct: 564 KIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRAL 623
Query: 459 VTSWGLYPGTLLTIALAREVLR 394
+ L P T T+A+ REVL+
Sbjct: 624 KMDFSLPPSTYATMAI-REVLK 644
>BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein.
Length = 311
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 633 QIHDAALRTGPRKISSNAHNQSYKTRS*--VVIFIFNRDIDSIP*KYPDIVL*QFIYYNK 460
+I D +L RKI N S++ + I +FN D+D++ K P + + Y
Sbjct: 214 KIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRAL 273
Query: 459 VTSWGLYPGTLLTIALAREVLR 394
+ L P T T+A+ REVL+
Sbjct: 274 KMDFSLPPSTYATMAI-REVLK 294
>AK000492-1|BAA91203.1| 205|Homo sapiens protein ( Homo sapiens
cDNA FLJ20485 fis, clone KAT07835. ).
Length = 205
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 633 QIHDAALRTGPRKISSNAHNQSYKTRS*--VVIFIFNRDIDSIP*KYPDIVL*QFIYYNK 460
+I D +L RKI N S++ + I +FN D+D++ K P + + Y
Sbjct: 108 KIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRAL 167
Query: 459 VTSWGLYPGTLLTIALAREVLR 394
+ L P T T+A+ REVL+
Sbjct: 168 KMDFSLPPSTYATMAI-REVLK 188
>AC073138-1|AAS07447.1| 195|Homo sapiens unknown protein.
Length = 195
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 633 QIHDAALRTGPRKISSNAHNQSYKTRS*--VVIFIFNRDIDSIP*KYPDIVL*QFIYYNK 460
+I D +L RKI N S++ + I +FN D+D++ K P + + Y
Sbjct: 98 KIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRAL 157
Query: 459 VTSWGLYPGTLLTIALAREVLR 394
+ L P T T+A+ REVL+
Sbjct: 158 KMDFSLPPSTYATMAI-REVLK 178
>AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein.
Length = 645
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -2
Query: 633 QIHDAALRTGPRKISSNAHNQSYKTRS*--VVIFIFNRDIDSIP*KYPDIVL*QFIYYNK 460
+I D +L RKI N S++ + I +FN D+D++ K P + + Y
Sbjct: 548 KIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRAL 607
Query: 459 VTSWGLYPGTLLTIALAREVLR 394
+ L P T T+A+ REVL+
Sbjct: 608 KMDFSLPPSTYATMAI-REVLK 628
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,767,182
Number of Sequences: 237096
Number of extensions: 1926574
Number of successful extensions: 3538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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