Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p10
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   2.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   3.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   5.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   7.3  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   7.3  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   9.6  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    23   9.6  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 58  ISDACKVNSKNEYIDVSNCKWRHLKTGF 141
           IS+  ++N   EYIDV +  W+ L+  F
Sbjct: 246 ISNNAQLNIPQEYIDVLDLDWKSLELLF 273


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 328 VNKMMNSVEFSDVNFIPASGGSTVPASETI 239
           +NK+M S+ FS  NF P+    +  +S ++
Sbjct: 202 LNKIMQSLNFSVENFFPSDESVSFSSSSSV 231


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 128 KCRHLQFETSMYSFLELTLHASEILFD--YYVDANFLIF 18
           K +H+    ++Y+F E +L   +ILFD   Y D   L+F
Sbjct: 184 KFKHIPGAYTVYAFFEWSLILWDILFDSALYWDFKPLVF 222


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 252 LQRRSASLRMIARRIRSSTLRKWNR 178
           LQR SASL+ I   + S  L K ++
Sbjct: 906 LQRESASLKQINNELESELLEKTSK 930


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 23  SKNLHLHNNQTIFRMHVKLIPKTNTLMSQIA 115
           S N+HL    T F   +KL P  N     +A
Sbjct: 220 SDNMHLQTLDTYFGTVIKLSPSVNVTQLVVA 250


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 104 TSMYSFLELTLHASEILFDYYVDAN 30
           +S YS   L   + ++LFDY++D +
Sbjct: 40  SSHYSKNNLPSDSPDLLFDYFIDGH 64


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 340 ESPVVNKMMNSVEFSDVNFIPASGGSTVPAS 248
           ++P  NK+ +S++ S +NF P      +P S
Sbjct: 292 QTPRKNKIRDSLQSSPLNFPPRDRPPLIPIS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,108
Number of Sequences: 5004
Number of extensions: 18441
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)