Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p10
(340 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 24 0.43
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.76
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.76
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 23 1.3
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 22 1.8
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 3.1
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 20 9.4
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 24.2 bits (50), Expect = 0.43
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 239 DRL*SRHGAPTGSRYEINIGKLNRIHHFIY 328
DRL S G+ T S+ E N G L+ + ++
Sbjct: 580 DRLDSLRGSTTDSQTEDNFGPLSNVRFAVF 609
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 205 CVLISSMALL-----GFTLPPDSGEKLT 227
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 273 CVLISSMALL-----GFTLPPDSGEKLT 295
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.76
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 210 CDALSSAAMLIVSEAGTVLPPEAGMKLT 293
C +SS A+L G LPP++G KLT
Sbjct: 273 CVLISSMALL-----GFTLPPDSGEKLT 295
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 22.6 bits (46), Expect = 1.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 271 GGSTVPASETIS 236
GGST PAS T+S
Sbjct: 21 GGSTTPASPTLS 32
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 22.2 bits (45), Expect = 1.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 26 KNLHLHNNQTIFRMHVKLIPKTNTLM 103
KNL+L ++ T + +H+K I T ++
Sbjct: 96 KNLNLRDSVTKYLIHLKEIEDTEPIL 121
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.4 bits (43), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 55 NISDACKVNSKNEYIDVSNCK 117
N C VN+ N+ +V NC+
Sbjct: 151 NFHPRCAVNNYNDPSNVRNCE 171
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 19.8 bits (39), Expect = 9.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +2
Query: 161 IHIHYVRFHFLNV 199
+HIHY +H V
Sbjct: 4 LHIHYQHYHITPV 16
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,733
Number of Sequences: 438
Number of extensions: 1091
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7715466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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