Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12p08
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    75   1e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    73   7e-14
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    43   6e-05
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    30   0.47 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   4.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   7.6  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = -1

Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
           FVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ D +    DE
Sbjct: 408 FVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADE 453



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 837 WGKLDHKFDLMYSKRAF 787
           W +LDHKFDLMYSKRAF
Sbjct: 392 WSRLDHKFDLMYSKRAF 408


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 31/39 (79%), Positives = 36/39 (92%)
 Frame = -1

Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDM 672
           FVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ ++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEV 442



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 837 WGKLDHKFDLMYSKRAF 787
           W +LDHKFDLMYSKRAF
Sbjct: 388 WSRLDHKFDLMYSKRAF 404


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 788 FVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGADDE 651
           F+HWY GEGM+E EF+EA     DL +  + Y E  I+  D     ++E
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEIEEE 442


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 173 PNSKLKSKYWTEKVCVNVGDNIIRACSAKRVYVKVMS 63
           P S ++ K W  +   N+GD+I+ AC  K +Y K++S
Sbjct: 119 PTSTIE-KLWRAR---NIGDDILSACIPKEIYEKMLS 151


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 710 VPELPNLLSLQRIRLPPSL 766
           +PELPNL +L+ +  PPSL
Sbjct: 15  IPELPNLEALRSLWPPPSL 33


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +3

Query: 78  INSLCTTCSYNIVTDINAHL 137
           I++LCTTC+ +++T+I+  +
Sbjct: 575 IHTLCTTCASHLLTEIDGFM 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,542
Number of Sequences: 5004
Number of extensions: 67801
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)