Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p08
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 77 1e-14
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 75 9e-14
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 75 9e-14
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 75 9e-14
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 47 2e-05
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 47 2e-05
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 46 3e-05
03_01_0034 + 318432-318825,318902-319851 46 3e-05
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 45 9e-05
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 44 1e-04
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 44 2e-04
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 42 5e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 29 3.5
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 28 8.1
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591... 28 8.1
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E+ + + G D +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDENEDGDDGD 449
Score = 34.7 bits (76), Expect = 0.093
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
+ ++DHKFDLMYSKRAF
Sbjct: 388 FSRIDHKFDLMYSKRAF 404
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 74.5 bits (175), Expect = 9e-14
Identities = 33/46 (71%), Positives = 37/46 (80%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E D G + +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSEFDDGDEGDEGD 449
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
+ ++D KFDLMYSKRAF
Sbjct: 388 FSRIDIKFDLMYSKRAF 404
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 74.5 bits (175), Expect = 9e-14
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E GADDE
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE------GADDE 443
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
+ ++DHKFDLMY+KRAF
Sbjct: 388 FSRIDHKFDLMYAKRAF 404
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 74.5 bits (175), Expect = 9e-14
Identities = 32/38 (84%), Positives = 34/38 (89%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV E D
Sbjct: 485 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEVED 522
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
+ ++D KFDLMY+KRAF
Sbjct: 469 FSRIDRKFDLMYAKRAF 485
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDE 439
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 407 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDE 460
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA DL A + Y + E D + +DE
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEEDYEEEEEDE 442
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D + +DE
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEYEDE 439
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 44.8 bits (101), Expect = 9e-05
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D + ++E
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEYEDEEE 439
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D ++E
Sbjct: 566 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEAEYEEEE 619
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 431
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY EGM+E EF+EA ++ L +Y + T++ DD+
Sbjct: 402 TAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDDYDEDDD 455
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 797 SELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
SEL V +G G G+F+ ++LA + + +D+ I+ +D D+
Sbjct: 166 SELKVDPRMGIGKPRGKFARKLKELAGIAKIFDDTCIKETDFNANVYDD 214
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 702 VISFQSCQIFSRFREFAFLHPFAYIPMHKKLAWN 803
VI+F SC I S L YI +H +L WN
Sbjct: 145 VIAFFSCDIVSNTFVICLLVTMGYIIVHLQLDWN 178
>03_05_0696 -
26856413-26856416,26857917-26858524,26859041-26859101,
26859181-26859557,26860314-26861156
Length = 630
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 562 AHSSSSDFVTRDKYTIAKVQIELSYKNDHNSSS---APG 669
AH++ +D + D ++ A QIE N+HNS S APG
Sbjct: 109 AHNAGADLIHNDTHSSA--QIEFGLLNNHNSMSVAPAPG 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,152,397
Number of Sequences: 37544
Number of extensions: 411772
Number of successful extensions: 1040
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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