Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12p08
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 77 2e-14
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 74 1e-13
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 74 1e-13
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 74 1e-13
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 74 1e-13
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 74 1e-13
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 72 6e-13
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 71 8e-13
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 71 8e-13
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 71 8e-13
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 71 8e-13
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 71 8e-13
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 71 8e-13
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 71 8e-13
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 69 3e-12
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 42 5e-04
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 42 5e-04
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 42 5e-04
U41270-2|AAA82440.1| 298|Caenorhabditis elegans Cell-death-rela... 31 1.3
AY303578-1|AAP57300.1| 298|Caenorhabditis elegans cell death-re... 31 1.3
AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine re... 29 3.1
AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine re... 28 7.2
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 28 7.2
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 7.2
AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine re... 28 7.2
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV + SD DDE
Sbjct: 399 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAD-SDANDNGDDE 443
Score = 35.1 bits (77), Expect = 0.063
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 383 WQRLDYKFDLMYAKRAF 399
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 388 WARLDHKFDLMYAKRAF 404
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 403 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 448
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 387 WARLDHKFDLMYAKRAF 403
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 388 WARLDHKFDLMYAKRAF 404
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 388 WARLDHKFDLMYAKRAF 404
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 73.7 bits (173), Expect = 1e-13
Identities = 30/38 (78%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEFSEARED+AALE+DY+EV +++ D
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSFD 441
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 388 WARLDHKFDLMYAKRAF 404
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 651
FVHWYVGEGMEEGEFSEAREDLAALE+DY+EV ++ +P +D+
Sbjct: 409 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLDAG--EPDEEDD 452
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 393 WARLDHKFDLMYAKRAF 409
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 71.7 bits (168), Expect = 6e-13
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADD 654
FVHW+VGEGMEEGEF EAR+DLAALE+DY EV+ +T+D++ D+
Sbjct: 407 FVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTADLEEENDE 451
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMYSKRAF
Sbjct: 391 WARLDHKFDLMYSKRAF 407
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 402 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 386 WSRLDYKFDLMYAKRAF 402
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 71.3 bits (167), Expect = 8e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
FVHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 39 FVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 76
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LD+KFDLMY+KRAF
Sbjct: 23 WSRLDYKFDLMYAKRAF 39
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEV 693
FVHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 410 FVHWYVGEGMEEGEFSEAREDMAALEKDYEEI 441
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 394 WARLDHKFDLMYAKRAF 410
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/32 (87%), Positives = 32/32 (100%)
Frame = -1
Query: 788 FVHWYVGEGMEEGEFSEAREDLAALERDYDEV 693
FVHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 382 FVHWYVGEGMEEGEFSEAREDMAALEKDYEEI 413
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3
Query: 837 WGKLDHKFDLMYSKRAF 787
W +LDHKFDLMY+KRAF
Sbjct: 366 WARLDHKFDLMYAKRAF 382
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQP 666
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T++ +P
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAEDEP 434
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADD 654
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T+D + D+
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADDEGEFDE 438
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGADDE 651
T+ + F+HWY GEGM+E EF+EA DL + + Y E E G D +
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATAEEDGELDGTDGD 442
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
T+ + F+HWY GEGM+E EF+EA ++ L +Y + T++
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAE 431
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
T+ + F+HWY GEGM+E EF+EA ++ L +Y + +D
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAD 431
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 812 TSCIPSELFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 675
T+ + F+HWY GEGM+E EF+EA ++ L +Y + +D
Sbjct: 386 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAD 431
>U41270-2|AAA82440.1| 298|Caenorhabditis elegans Cell-death-related
nuclease protein4 protein.
Length = 298
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -1
Query: 839 PGASLTTSSTSCIPSELFVHWYVGEGMEEGEFS---EAREDL 723
P S+ T+ T + E F W + G+EEG+F+ ++R+DL
Sbjct: 75 PQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDL 116
>AY303578-1|AAP57300.1| 298|Caenorhabditis elegans cell
death-related nuclease 4 protein.
Length = 298
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -1
Query: 839 PGASLTTSSTSCIPSELFVHWYVGEGMEEGEFS---EAREDL 723
P S+ T+ T + E F W + G+EEG+F+ ++R+DL
Sbjct: 75 PQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDL 116
>AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine
receptor, class j protein15 protein.
Length = 343
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 248 CGQCLPHTHFLLLRHVILRYISLFWPNSKLKSKYWTEKVCV 126
CG C+ ++ +L+ H I RYI+LF+P KL + + C+
Sbjct: 99 CG-CISLSYGILIIHFIYRYITLFFP--KLVASIFQSTGCI 136
>AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine
receptor, class j protein16 protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 248 CGQCLPHTHFLLLRHVILRYISLFWP 171
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CVSLSYGILIIHFIYRYITLFFP 123
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 57 YTRHYFYINSLCTTCSYNIVTDINAHLLRPIFAFQFRIG 173
Y + ++C S+ + TD+ +L+ PI F IG
Sbjct: 414 YIENIVDTKNICYVISWYLATDLQLYLMSPILLLSFAIG 452
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 532 KYRINNFKSKAHSSSSDFVTRDKYTIAKVQIELSYKNDHNSSSAPGC 672
KYR + + S + + D+Y + Q E S K +HN+ AP C
Sbjct: 396 KYRKTSVSADP-KSHTPILMADEYKEPQKQGEFSSKKNHNTHQAPAC 441
>AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine
receptor, class j protein13 protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 248 CGQCLPHTHFLLLRHVILRYISLFWP 171
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CISLSYGILVIHFIYRYIALFFP 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,609
Number of Sequences: 27780
Number of extensions: 380795
Number of successful extensions: 969
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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